| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,618,992 | Δ6,688 bp | rhsB–[yhhJ] | rhsB, yhhH, yhhI, [yhhJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3618992 | 3625679 | 6688 | 55 [0] | [0] 53 | rhsB–[yhhJ] | rhsB,yhhH,yhhI,[yhhJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3618991 | 0 (0.000) | 53 (0.680) | 43/96 | 0.1 | 100% | intergenic (+2/‑201) | nikR/rhsB | DNA‑binding transcriptional repressor NikR/rhs element protein RhsB |
| ? | NC_000913 | 3625680 = | NA (NA) | coding (1124/1125 nt) | yhhJ | ABC transporter family protein YhhJ | |||||
CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:864759/1‑50 GCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT > 1:1440957/1‑49 CGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTA > 1:4884633/1‑50 GCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACG > 1:2064662/1‑50 GTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGC > 1:76340/1‑49 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA < 1:3777149/50‑1 TGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCA > 1:2931708/1‑50 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG < 1:1390656/50‑1 GGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTG > 1:5818658/1‑50 GCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGT < 1:5019766/50‑1 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:1283216/1‑50 ACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC < 1:310022/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC < 1:5804733/50‑1 CGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCC > 1:1511962/1‑49 GGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCC > 1:5137042/1‑49 GGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAA > 1:2344401/1‑50 GCATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAAT > 1:2095265/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:2310688/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:1409829/1‑50 CATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATC > 1:17436/1‑50 ATTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCG > 1:5045583/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT < 1:1424993/50‑1 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:2487835/1‑50 TTTGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGT > 1:318912/1‑50 TGCAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCT > 1:5781918/1‑50 CAGTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTT < 1:429414/49‑1 GTGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCT > 1:3020489/1‑50 TGCTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTG < 1:3718785/50‑1 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:2902886/1‑50 CTTGCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAA > 1:2496019/1‑50 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATC < 1:2241119/49‑1 GCCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAAT < 1:660483/48‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:4208890/49‑1 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG > 1:4491047/1‑49 CCGAAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCG < 1:5043903/49‑1 AAGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:783737/1‑49 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCA < 1:5946909/50‑1 AGGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAG > 1:1976084/1‑48 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG > 1:5493952/1‑50 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG > 1:4697816/1‑50 GGAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAG < 1:5840231/50‑1 GAAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGC < 1:1683322/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1604000/1‑50 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 1:5200276/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG < 1:3201213/50‑1 AAGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:408082/1‑50 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:3105164/1‑49 AGATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCG > 1:1446561/1‑49 GATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCA < 1:5445045/50‑1 ATTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAA > 1:3739264/1‑50 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:5263375/50‑1 TTGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAAT < 1:3298031/50‑1 TGAGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATG > 1:425216/1‑50 AGTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:4648346/1‑50 GTTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > 1:5223471/1‑49 CGCGGCGTGCGGCACGGGCATTTGCAGTGCTTGCCGAAGGAAGATTGAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3618942‑3618991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTACGCCATTGTCCCAATCGTCTTCCTGAATCGCAGCAGCGCAATGGT > NC_000913/3625680‑3625726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |