| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 114 [0] | [0] 116 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 111 (1.430) | 63/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
Only 100 of 114 total aligned reads displayed.
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:1655004/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:2310599/1‑50 AAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCC > 1:780266/1‑50 AAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAATTGCCG < 1:4934967/50‑1 AACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGA > 1:5872566/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:1186226/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:3313947/1‑50 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC < 1:1441768/50‑1 ACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGAC > 1:2654935/1‑50 CTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACT > 1:1683102/1‑50 CTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTT > 1:2617384/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACC < 1:6299/50‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC < 1:447169/49‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC < 1:4404363/49‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:247954/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:4802387/1‑49 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTC < 1:1291846/47‑1 AGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCAACTTCA < 1:900311/48‑1 GTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCAC > 1:5181377/1‑48 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:4086684/1‑50 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:2606102/1‑50 TGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:487194/1‑50 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:4987926/1‑49 GTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAG > 1:4624910/1‑49 AATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT > 1:3903527/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:5867613/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT > 1:1613231/1‑50 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATT < 1:4512825/50‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:1603962/49‑1 ATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTAT < 1:440207/49‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC > 1:354851/1‑50 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:5605179/50‑1 TAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTC < 1:3059656/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC < 1:2586496/50‑1 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC > 1:841714/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTC > 1:1910547/1‑50 ATGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCT < 1:241662/49‑1 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:2498858/1‑50 TGTAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCT > 1:490732/1‑50 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:1302417/49‑1 TAGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTG < 1:4705416/49‑1 AGCCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGT > 1:314862/1‑50 CCTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTA < 1:5769775/50‑1 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:1026138/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT > 1:3945382/1‑50 CTCGTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTAT < 1:16688/50‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:3158693/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:5927450/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:3156283/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT < 1:3941697/49‑1 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGT > 1:2580776/1‑49 GTGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATG < 1:3950528/48‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:2109116/50‑1 TGTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCA < 1:4652290/50‑1 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:1595044/1‑50 GTCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG > 1:555833/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG < 1:2539155/50‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG > 1:2545970/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGG > 1:795088/1‑50 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:3349130/49‑1 TCTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAG < 1:3773275/49‑1 CTTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGT > 1:957886/1‑50 TTGCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTT > 1:332862/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT > 1:2108030/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT > 1:4564308/1‑50 GCGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGT < 1:3315667/47‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:4331933/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:5802517/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG > 1:4886755/1‑50 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTG < 1:3748647/50‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:2272704/49‑1 CGAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTT < 1:3022323/49‑1 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:2372255/1‑50 GAGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGC > 1:5194837/1‑50 AGGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCC < 1:677650/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:567136/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:1892974/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:5467633/50‑1 GGATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCT < 1:783974/50‑1 GATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTG < 1:1098909/50‑1 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:1485153/1‑50 ATAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:3496649/1‑50 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCG < 1:2492033/50‑1 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:5078205/1‑49 TAAGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGC > 1:1293922/1‑49 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:3436063/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:1836403/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAA > 1:3176636/1‑50 AGTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGA < 1:4871494/49‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:4219002/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:3173992/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:3372006/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT < 1:4538312/50‑1 GTGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAAT > 1:4211371/1‑50 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:2618293/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG < 1:5440699/50‑1 TGCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:697494/1‑50 GCCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATG > 1:179731/1‑49 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA < 1:4615984/50‑1 CCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGC < 1:1551476/49‑1 AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3888382‑3888431‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCGACTTCACCAGTATTCTCTGGTTATGTCAGGTTTTGCCTGCGAATGCA > NC_000913/3906599‑3906647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |