| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 89 [0] | [0] 89 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 88 (1.110) | 57/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509513‑1509610 | ttATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCt > 1:4920224/1‑49 (MQ=255)ttATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa < 1:1255343‑M1/50‑2 (MQ=255)ttATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa < 1:3323038‑M1/50‑2 (MQ=255) tATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 1:3407443‑M1/1‑48 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:2312208‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:5460184‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:5309949‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:4672072‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:3624798‑M1/1‑46 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa < 1:2355683‑M1/50‑7 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:3057267‑M1/49‑6 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:89402‑M1/49‑6 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa < 1:1419584‑M1/50‑8 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 1:703872‑M1/50‑9 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:5489474‑M1/1‑41 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:3561404‑M1/50‑10 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:3930179‑M1/50‑10 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:645476‑M1/1‑41 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:2566855‑M1/50‑10 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:4944966‑M1/50‑12 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaac < 1:4639402‑M1/49‑11 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:3226193‑M1/1‑38 (MQ=255) ctctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac < 1:471835‑M1/50‑13 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:2143105‑M1/1‑37 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:3535676‑M1/1‑37 (MQ=255) ctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:5907983‑M1/1‑36 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccat > 1:4566874‑M1/1‑35 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:5909082‑M1/48‑14 (MQ=255) ttACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacc < 1:6047465‑M1/48‑14 (MQ=255) tACACCCGCGCCGGAAGTCGGTTATATGGTTTCTaaacaaaaacaccatt > 1:5947373‑M1/1‑34 (MQ=255) atacccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 1:1473320‑M1/45‑15 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:18662‑M1/49‑17 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca < 1:5983659‑M1/47‑15 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:2428245‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:5537732‑M1/49‑18 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:3080467‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:655698‑M1/1‑31 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg < 1:3277051‑M1/50‑20 (MQ=255) cccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgc < 1:792762‑M1/50‑21 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:1821388‑M1/50‑22 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgca < 1:63613‑M1/50‑22 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:2493343‑M1/1‑27 (MQ=255) gcgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcagg > 1:2859308‑M1/1‑27 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:1781378‑M1/1‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:5783985‑M1/1‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:2024210‑M1/1‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:5630333‑M1/1‑25 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:3082353‑M1/1‑24 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:4407772‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:2078579‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:4655102‑M1/1‑23 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg < 1:4484569‑M1/50‑29 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:1252464‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:2043881‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg < 1:56345‑M1/50‑30 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg < 1:1073639‑M1/50‑30 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt > 1:4471951‑M1/1‑20 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt < 1:4390321‑M1/50‑31 (MQ=255) aaGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggt < 1:4758003‑M1/50‑31 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 1:3860088‑M1/50‑32 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:5184180‑M1/1‑19 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:3418617‑M1/1‑19 (MQ=255) ggCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgt > 1:2386976‑M1/1‑18 (MQ=255) gCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:2756212‑M1/50‑34 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:3651159‑M1/1‑16 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:891758‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:3047301‑M1/1‑15 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa > 1:2804291‑M1/1‑14 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat < 1:1891725‑M1/50‑38 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:1250386‑M1/1‑13 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:3716741‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:5212697‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 1:5212494‑M1/49‑39 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca < 1:2351400‑M1/50‑43 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtc < 1:5407402‑M1/49‑42 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 1:557665‑M1/1‑7 (MQ=255) ggTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat > 1:1615347‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:3927352‑M1/1‑6 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:3898111‑M1/1‑6 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcat < 1:4551667‑M1/49‑44 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:2704491‑M1/1‑5 (MQ=255) ttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:2631192‑M1/1‑4 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattga < 1:2207710‑M1/49‑47 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattggg > 1:1619162‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:3677595‑M1/1‑2 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:4559974‑M1/1‑2 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:843274‑M1/1‑1 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:5386344‑M1/1‑1 (MQ=255) taaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgagga > 1:1113472‑M1/1‑1 (MQ=255) | TTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGAAG > NC_000913/1509513‑1509610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |