| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 119 [0] | [0] 119 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 115 (1.480) | 54/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
Only 100 of 119 total aligned reads displayed.
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 | gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:114376‑M1/50‑1 (MQ=255)gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:2220252‑M1/50‑1 (MQ=255)gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:5269484‑M1/50‑1 (MQ=255)gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:2688956‑M1/50‑1 (MQ=255) cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:2537833‑M1/50‑2 (MQ=255) cATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAa < 1:2130722‑M1/50‑2 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:224665‑M1/1‑48 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:1917347‑M1/1‑48 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:3065433‑M1/50‑4 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:2536653‑M1/1‑46 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:2617483‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGTAACAGTGAGAagcg > 1:1335954‑M1/1‑45 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgc < 1:4887337‑M1/50‑6 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:4444832‑M1/1‑45 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:182833‑M1/1‑45 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:3110250‑M1/1‑45 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:437899‑M1/1‑45 (MQ=255) cGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:1828079‑M1/1‑44 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:4136731‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:3750985‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:3725102‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:5303066‑M1/1‑43 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:5736149‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:639707‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt < 1:3494434‑M1/50‑9 (MQ=255) tGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagt > 1:1116799‑M1/1‑42 (MQ=255) gCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg > 1:4222768‑M1/1‑41 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:4504052‑M1/50‑11 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:2518183‑M1/50‑11 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:1376545‑M1/1‑39 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3722594‑M1/1‑38 (MQ=255) aTGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:5671498‑M1/1‑38 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:796542‑M1/50‑14 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc < 1:3354262‑M1/48‑12 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:2777187‑M1/1‑36 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:2437865‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5363494‑M1/1‑35 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5614021‑M1/1‑35 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5046180‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:3052326‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:4629785‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:750234‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:3826517‑M1/1‑33 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcc < 1:1933‑M1/49‑17 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:1710454‑M1/1‑32 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:3924477‑M1/1‑32 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat > 1:4245095‑M1/1‑32 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcc > 1:3251997‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcc > 1:553054‑M1/1‑30 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc < 1:2464803‑M1/49‑20 (MQ=255) agacacaaaAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:1399358‑M1/48‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:639104‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:3606053‑M1/1‑29 (MQ=255) cacacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc > 1:5026031‑M1/1‑28 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAcgcgcagtgcccagccatcccga > 1:847194‑M1/1‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:814146‑M1/1‑25 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:4138878‑M1/1‑25 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:3057668‑M1/1‑25 (MQ=255) caAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatac > 1:1128530‑M1/1‑24 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:3493218‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:1958001‑M1/1‑23 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:3565688‑M1/1‑21 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgc > 1:3295175‑M1/1‑21 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:2008363‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:1132625‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:24643‑M1/50‑31 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg < 1:3380237‑M1/50‑32 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:4451323‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:5773376‑M1/1‑18 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:5702554‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:3008185‑M1/1‑17 (MQ=255) gTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgct > 1:2846015‑M1/1‑17 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:152411‑M1/50‑35 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt > 1:632591‑M1/1‑16 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1580676‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:5769221‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:4680501‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:5111617‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:5162635‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:278623‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:2399833‑M1/1‑14 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca > 1:421860‑M1/1‑13 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:4230824‑M1/50‑39 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:2489061‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:5028236‑M1/1‑9 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:3707299‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:206561‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:5090839‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat < 1:3029426‑M1/50‑44 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc > 1:5401901‑M1/1‑6 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc < 1:2419240‑M1/50‑45 (MQ=255) gTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatc > 1:2522674‑M1/1‑6 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:5282431‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctt < 1:4170256‑M1/50‑48 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:3353777‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:1645083‑M1/49‑47 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:725110‑M1/1‑3 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc > 1:3045579‑M1/1‑3 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:2063339‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:500692‑M1/50‑49 (MQ=255) | GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTA > NC_000913/1627468‑1627565 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |