| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,509,631 | Δ8,319 bp | [yfeO]–pdeA | [yfeO], ypeC, mntH, nupC, insL‑3, pdeA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2509631 | 2517949 | 8319 | 77 [0] | [0] 72 | [yfeO]–pdeA | [yfeO],ypeC,mntH,nupC,insL‑3,pdeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2509630 | 0 (0.000) | 72 (0.910) | 46/98 | 0.1 | 100% | coding (1/1257 nt) | yfeO | putative transport protein YfeO |
| ? | NC_000913 | 2517950 = | 0 (0.000) | intergenic (‑118/+91) | pdeA/alaX | putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala | |||||
TTGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTCCCCGCCGT > NC_000913/2509582‑2509679 | ttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:944453/1‑49 (MQ=255)ttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa < 1:4796594/49‑1 (MQ=255)ttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa < 1:4353618/49‑1 (MQ=255)ttGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa < 1:2118246/49‑1 (MQ=255) tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACa > 1:2710043/1‑48 (MQ=255) tGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAc < 1:393428‑M1/49‑2 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 1:964775‑M1/49‑3 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 1:35165‑M1/49‑3 (MQ=255) gCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAca < 1:2952702‑M1/49‑3 (MQ=255) cAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcagg > 1:2231535‑M1/1‑46 (MQ=255) aaGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggc < 1:1165090‑M1/50‑6 (MQ=255) aaGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggc < 1:6048604‑M1/50‑6 (MQ=255) aaGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggc < 1:6009293‑M1/50‑6 (MQ=255) aaGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggc > 1:4090517‑M1/1‑45 (MQ=255) aGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcg < 1:1560295‑M1/50‑7 (MQ=255) aGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcg > 1:4570953‑M1/1‑44 (MQ=255) aGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcg < 1:5456109‑M1/50‑7 (MQ=255) gCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcgg > 1:1929874‑M1/1‑43 (MQ=255) gCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcgg > 1:1363107‑M1/1‑43 (MQ=255) gCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcgg > 1:4003023‑M1/1‑43 (MQ=255) cTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggc < 1:5954322‑M1/50‑9 (MQ=255) tGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggca > 1:1682981‑M1/1‑41 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 1:1638485‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 1:3177108‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcact < 1:3805872‑M1/50‑12 (MQ=255) ggCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcac > 1:3275190‑M1/1‑39 (MQ=255) gCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcacta < 1:3586463‑M1/50‑13 (MQ=255) cAAACTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaa > 1:2917452‑M1/1‑37 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac > 1:4048226‑M1/1‑36 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac < 1:4525925‑M1/50‑15 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac > 1:246483‑M1/1‑36 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac < 1:4066877‑M1/50‑15 (MQ=255) aaaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaac > 1:2312723‑M1/1‑36 (MQ=255) aaCTAAGTATCTTACCCCGCATAAGGAATAGAACAcaggcggcactaacc > 1:5810905‑M1/1‑35 (MQ=255) aaCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacc < 1:5828038‑M1/50‑16 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 1:552755‑M1/50‑17 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 1:4084545‑M1/50‑17 (MQ=255) aCTAAGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaaccc < 1:1201881‑M1/50‑17 (MQ=255) aaGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccgga > 1:5034638‑M1/1‑31 (MQ=255) aGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggac < 1:5173206‑M1/50‑21 (MQ=255) aGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggac < 1:2426299‑M1/50‑21 (MQ=255) aGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccgg < 1:4621874‑M1/48‑19 (MQ=255) aGTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccgg < 1:248539‑M1/48‑19 (MQ=255) gTATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacg < 1:3203691‑M1/50‑22 (MQ=255) tATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgt < 1:2674496‑M1/50‑23 (MQ=255) tATCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgt < 1:2301431‑M1/50‑23 (MQ=255) aTCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacg > 1:1644639‑M1/1‑27 (MQ=255) tCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:143635‑M1/49‑24 (MQ=255) tCTGACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgta < 1:2012599‑M1/49‑24 (MQ=255) gACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact > 1:5043128‑M1/1‑23 (MQ=255) gACCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagact > 1:1796780‑M1/1‑23 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactg < 1:1966162‑M1/50‑29 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac < 1:1987292‑M1/48‑27 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac < 1:3883628‑M1/48‑27 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtagac < 1:355711‑M1/48‑27 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtaga < 1:114578‑M1/47‑26 (MQ=255) aCCCCGCATAAGGAATAGAACAcaggcggcactaacccggacgtaga < 1:2753036‑M1/47‑26 (MQ=255) ccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat < 1:5542388‑M1/50‑32 (MQ=255) ccGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtat < 1:2812874‑M1/50‑32 (MQ=255) cGCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatt < 1:3271735‑M1/50‑33 (MQ=255) gCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta > 1:4439967‑M1/1‑17 (MQ=255) gCATAAGGAATAGAACAcaggcggcactaacccggacgtagactgtatta > 1:4241445‑M1/1‑17 (MQ=255) aaGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaa > 1:2395602‑M1/1‑13 (MQ=255) aGGAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaa < 1:3765892‑M1/50‑39 (MQ=255) ggAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaag > 1:192454‑M1/1‑11 (MQ=255) gAATAGAACAcaggcggcactaacccggacgtagactgtattacaaaagc < 1:3010327‑M1/50‑41 (MQ=255) aaTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcg > 1:3159640‑M1/1‑9 (MQ=255) aTAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcgg < 1:2853221‑M1/50‑43 (MQ=255) tAGAACAcaggcggcactaacccggacgtagactgtattacaaaagcggc < 1:2414793‑M1/50‑44 (MQ=255) aGAACAcaggcggcactaacccggacgtagactgtattacaaaagcggc > 1:1692140‑M1/1‑6 (MQ=255) aGAACAcaggcggcactaacccggacgtagactgtattacaaaagcggc > 1:1387859‑M1/1‑6 (MQ=255) gAACAcaggcggcactaacccggacgtagactgtattacaaaagcggca > 1:5634170‑M1/1‑5 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaa < 1:6003107‑M1/50‑49 (MQ=255) cacaggcggcactaacccggacgtagactgtattacaaaagcggcaaa > 1:5822719‑M1/1‑2 (MQ=255) acaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaag > 1:5755531‑M1/1‑1 (MQ=255) acaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaag < 1:3183165‑M1/50‑50 (MQ=255) acaggcggcactaacccggacgtagactgtattacaaaagcggcaaaaag > 1:5020595‑M1/1‑1 (MQ=255) | TTGCAAGCTGGGCAAACTAAGTATCTGACCCCGCATAAGGAATAGAACATGCTCCATCCGCGAGCCAGAACCATGTTGTTATTATCGCTCCCCGCCGT > NC_000913/2509582‑2509679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |