| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 75 [0] | [0] 77 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 74 (0.930) | 46/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090297‑3090394 | ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:2494442/49‑1 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:2563160‑M1/50‑5 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac < 1:4482302‑M1/50‑6 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:106641‑M1/50‑7 (MQ=255) cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac < 1:1609451‑M1/50‑8 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:1281403‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:2216276‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacact < 1:384110‑M1/50‑9 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3303881‑M1/1‑42 (MQ=255) gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactg < 1:131936‑M1/50‑10 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:5497648‑M1/50‑11 (MQ=255) tttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc > 1:4179097‑M1/1‑39 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:5933337‑M1/1‑38 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:3650928‑M1/1‑38 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:130760‑M1/1‑37 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:2772613‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:3712708‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:3710293‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:3915409‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:6041884‑M1/48‑12 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:4359855‑M1/1‑36 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:4323941‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga < 1:5579895‑M1/50‑16 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:2987005‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg < 1:1269355‑M1/49‑15 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:2581710‑M1/1‑34 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:1309411‑M1/1‑34 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:3918323‑M1/1‑33 (MQ=255) tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt > 1:3239794‑M1/1‑33 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:282988‑M1/1‑32 (MQ=255) aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc > 1:3903351‑M1/1‑32 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:5830150‑M1/1‑31 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:4011361‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct > 1:566068‑M1/1‑31 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:4461351‑M1/48‑18 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:701194‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt > 1:1478190‑M1/1‑30 (MQ=255) ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt > 1:3510322‑M1/1‑29 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:3177654‑M1/49‑23 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:5385173‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:4077889‑M1/50‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:345095‑M1/1‑25 (MQ=255) tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:3869947‑M1/1‑25 (MQ=255) ggCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt > 1:216170‑M1/1‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:3023500‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:940536‑M1/48‑26 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:663143‑M1/50‑29 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa > 1:2264502‑M1/1‑22 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:3600491‑M1/50‑29 (MQ=255) tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac > 1:631968‑M1/1‑21 (MQ=255) cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc > 1:4209318‑M1/1‑20 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac < 1:2254233‑M1/48‑30 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:2668182‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:936780‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:751288‑M1/1‑18 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:5419348‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:1711062‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:18337‑M1/50‑33 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:5347946‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:1315407‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:477383‑M1/49‑34 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:5209441‑M1/49‑34 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:1931497‑M1/49‑35 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:2027570‑M1/49‑37 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:1740083‑M1/49‑37 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:1459070‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:554362‑M1/50‑39 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:1537586‑M1/50‑40 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca < 1:5302689‑M1/50‑40 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:858891‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:183332‑M1/1‑11 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:745959‑M1/3‑7 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta < 1:433692‑M1/50‑46 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:5827651‑M1/50‑48 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa < 1:2894519‑M1/50‑49 (MQ=255) | CCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090297‑3090394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |