| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908 | 258683 | 776 | 98 [0] | [0] 98 | insB9–[crl] | insB9,insA9,[crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 79 (1.190) | 49/82 | 0.0 | 100% | intergenic (+8/+16) | crl/insB9 | RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | RNA polymerase holoenzyme assembly factor Crl | |||||
AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAA > NC_000913/258635‑258732 | agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaa < 1:5720306‑M2/1‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg < 1:4430170‑M2/2‑1 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg > 1:2459366‑M2/49‑50 (MQ=255) gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAg < 1:5846466‑M2/2‑1 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:3901798‑M2/3‑1 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:2409435‑M2/3‑1 (MQ=255) attgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGt < 1:2845597‑M2/3‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:2654293‑M2/4‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:2145835‑M2/4‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:4659914‑M2/4‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg < 1:5368215‑M2/4‑1 (MQ=255) ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 1:3558273‑M2/47‑50 (MQ=255) tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 1:289571‑M2/46‑49 (MQ=255) tgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTg > 1:2983192‑M2/46‑49 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc < 1:5614319‑M2/5‑1 (MQ=255) gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGc > 1:374482‑M2/45‑49 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa < 1:1126570‑M2/6‑1 (MQ=255) atcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:1066042‑M2/44‑49 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCaaa < 1:3551281‑M2/8‑1 (MQ=255) tcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:1505110‑M2/43‑48 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:2562873‑M2/41‑46 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCa > 1:5876763‑M2/41‑46 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg < 1:5757113‑M2/9‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg < 1:3636109‑M2/9‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAg < 1:1118840‑M2/9‑1 (MQ=255) aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGa < 1:2853093‑M2/10‑1 (MQ=255) aaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATa < 1:640285‑M2/12‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa < 1:4256273‑M2/13‑1 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:4900849‑M2/38‑50 (MQ=255) aaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATaa > 1:1144547‑M2/38‑50 (MQ=255) aatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt < 1:3771720‑M2/14‑1 (MQ=255) atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:3841018‑M2/15‑1 (MQ=255) atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:4297266‑M2/15‑1 (MQ=255) atttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc < 1:99531‑M2/15‑1 (MQ=255) accgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGAt < 1:1217254‑M2/18‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 1:1045311‑M2/20‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 1:4745762‑M2/20‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc < 1:3378599‑M2/20‑1 (MQ=255) ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTc > 1:1792131‑M2/31‑50 (MQ=255) cgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt < 1:1506536‑M2/21‑1 (MQ=255) gcactagccccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtt > 1:1634049‑M2/29‑50 (MQ=255) cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttt < 1:3475764‑M2/23‑1 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt > 1:1179299‑M2/27‑50 (MQ=255) actaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt > 1:904667‑M2/27‑50 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:3281207‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:2778472‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:468699‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:5840986‑M2/25‑1 (MQ=255) ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt > 1:5565061‑M2/26‑50 (MQ=255) ctaggcccatatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt < 1:2954844‑M2/25‑1 (MQ=255) aggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc > 1:2032075‑M2/24‑49 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc < 1:2907323‑M2/26‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc < 1:3108130‑M2/26‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTc < 1:3057003‑M2/26‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 1:3103589‑M2/27‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 1:4799759‑M2/27‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 1:4881585‑M2/27‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCg < 1:5068404‑M2/27‑1 (MQ=255) ggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGa < 1:5285358‑M2/28‑1 (MQ=255) gcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAt < 1:4812340‑M2/29‑1 (MQ=255) cccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt < 1:779292‑M2/30‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg < 1:4245287‑M2/31‑1 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg > 1:1739146‑M2/20‑50 (MQ=255) ccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg < 1:5535829‑M2/31‑1 (MQ=255) cgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGt > 1:1081029‑M2/19‑50 (MQ=255) gtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc < 1:750750‑M2/33‑1 (MQ=255) atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg > 1:4906427‑M2/16‑50 (MQ=255) atattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg > 1:883071‑M2/16‑50 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:5544561‑M2/36‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg < 1:4682497‑M2/36‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTgg > 1:416833‑M2/15‑50 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTg < 1:3461278‑M2/35‑1 (MQ=255) tattcgtgaaggtaAGTGCAAAGATAATCGATTATTTTTCGATTGTCTg < 1:3969074‑M2/35‑1 (MQ=255) attcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc > 1:3919194‑M2/14‑50 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc < 1:4500357‑M2/37‑1 (MQ=255) ttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc < 1:5672165‑M2/37‑1 (MQ=255) tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:1772680‑M2/12‑50 (MQ=255) cgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTg > 1:5250467‑M2/11‑49 (MQ=255) gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa < 1:4205714‑M2/41‑1 (MQ=255) tgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTAt < 1:5379256‑M2/42‑1 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg < 1:4074864‑M2/43‑1 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATg < 1:5976786‑M2/43‑1 (MQ=255) aaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc > 1:4056948‑M2/7‑50 (MQ=255) aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCg < 1:524602‑M2/45‑1 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:4052397‑M2/5‑50 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt < 1:3412421‑M2/46‑1 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt < 1:3957315‑M2/46‑1 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt < 1:4340061‑M2/46‑1 (MQ=255) ggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:2383598‑M2/5‑50 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:197055‑M2/4‑49 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGt > 1:1264732‑M2/4‑49 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc < 1:5349484‑M2/47‑1 (MQ=255) gtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTc < 1:2064337‑M2/47‑1 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa < 1:2220093‑M2/48‑1 (MQ=255) taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCa < 1:3785564‑M2/48‑1 (MQ=255) aAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa > 1:3264555‑M2/2‑50 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa < 1:3770764/49‑1 (MQ=255) aGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa < 1:3566544/49‑1 (MQ=255) | AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAA > NC_000913/258635‑258732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |