Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3423697–3424234 3426801–3424653 420–3105 12 [10] [10] 11 [rrfD]–rrlD [rrfD],rrlD

CATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACAC  >  NC_000913/3423647‑3423709
                                                 |             
cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgg               <  1:4103641/50‑1 (MQ=255)
cATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATgg               <  1:4360584/50‑1 (MQ=255)
 atatCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg              <  1:5632757/50‑1 (MQ=255)
   atCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATggg              >  1:3400373/1‑48 (MQ=255)
     cAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGgaga          >  1:3710229/1‑50 (MQ=255)
      aGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAc         >  1:1758374/1‑50 (MQ=255)
          cGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCca     <  1:3037736/50‑1 (MQ=40)
          cGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCca     >  1:3770820/1‑50 (MQ=40)
           gCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCca     >  1:930141/1‑49 (MQ=38)
            cTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca   >  1:1170709/1‑50 (MQ=38)
            cTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCcaca   >  1:4857157/1‑50 (MQ=38)
             tAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCacac  >  1:3322728/1‑50 (MQ=35)
                                                 |             
CATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACAC  >  NC_000913/3423647‑3423709

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: