BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	12,086	C→T	intergenic (‑300/‑77)	yaaI ← / → dnaK	DUF2541 domain‑containing protein YaaI/chaperone protein DnaK

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	12,086	0	C	T	100.0%	434.8 / NA	106	intergenic (‑300/‑77)	yaaI/dnaK	DUF2541 domain‑containing protein YaaI/chaperone protein DnaK
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (43/63); total (43/63)

Only 100 of 106 total aligned reads displayed.

TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACA  >  NC_000913/12039‑12131

ttAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                             >  1:5864776/1‑50 (MQ=255)

 tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                             <  1:5810374/49‑1 (MQ=255)

 tagtagTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAg                                             <  1:3170917/49‑1 (MQ=255)

  agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt                                            <  1:1328524/49‑1 (MQ=255)

  agtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGt                                            <  1:4168413/49‑1 (MQ=255)

   gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                           <  1:5743873/49‑1 (MQ=255)

   gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                           >  1:554052/1‑49 (MQ=255)

   gtagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGtt                                           <  1:1741915/49‑1 (MQ=255)

    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                          >  1:5091638/1‑49 (MQ=255)

    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTg                                          >  1:2306030/1‑49 (MQ=255)

    tagtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGa                                         <  1:4498961/50‑1 (MQ=255)

      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                       <  1:5731630/50‑1 (MQ=255)

      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                       <  1:3184829/50‑1 (MQ=255)

      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaaa                                       <  1:4156584/50‑1 (MQ=255)

      gtCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGaa                                        <  1:1441368/49‑1 (MQ=255)

       tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      >  1:4315881/1‑50 (MQ=255)

       tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      <  1:2080998/50‑1 (MQ=255)

       tCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      <  1:2094902/50‑1 (MQ=255)

        cAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      >  1:308800/1‑49 (MQ=255)

         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCa                                    <  1:5732735/50‑1 (MQ=255)

         aaCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCa                                    <  1:3472849/50‑1 (MQ=255)

          aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      >  1:3045982/1‑47 (MQ=255)

          aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAAc                                      >  1:1896430/1‑47 (MQ=255)

          aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg                                   <  1:1150900/50‑1 (MQ=255)

          aCCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAg                                   <  1:5146856/50‑1 (MQ=255)

           ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                  <  1:1596897/50‑1 (MQ=255)

           ccGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGa                                  <  1:813873/50‑1 (MQ=255)

            cGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGAc                                 <  1:5561795/50‑1 (MQ=255)

             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                <  1:2379497/50‑1 (MQ=255)

             gCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACg                                <  1:5928520/50‑1 (MQ=255)

              cAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGt                               <  1:38067/50‑1 (MQ=255)

               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                              <  1:3434157/50‑1 (MQ=255)

               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                              <  1:1516856/50‑1 (MQ=255)

               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                              >  1:5481741/1‑50 (MQ=255)

               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                              <  1:5198576/50‑1 (MQ=255)

               agtgagtgAGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGtt                              <  1:5960570/50‑1 (MQ=255)

                gtgagtgaGTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGttt                             >  1:1015341/1‑50 (MQ=255)

                 tgagtgagTCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTc                            >  1:1544963/1‑50 (MQ=255)

                 tgagtgagTCTGCAAAAAAATGAAAGTGGGTAGTTGAAACCAGACGTTTc                            <  1:387549/50‑1 (MQ=255)

                  gagtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg                           >  1:5064972/1‑50 (MQ=255)

                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCg                           <  1:3950663/49‑1 (MQ=255)

                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                          >  1:3621975/1‑50 (MQ=255)

                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                          <  1:5837363/50‑1 (MQ=255)

                   agtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGc                          <  1:5509924/50‑1 (MQ=255)

                    gtgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcc                         >  1:2064148/1‑50 (MQ=255)

                     tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                        >  1:5185798/1‑50 (MQ=255)

                     tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                        >  1:3286315/1‑50 (MQ=255)

                     tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                        >  1:2234175/1‑50 (MQ=255)

                     tgagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGccc                        >  1:2018359/1‑50 (MQ=255)

                      gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                       >  1:5150301/1‑50 (MQ=255)

                      gagtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                       >  1:631897/1‑50 (MQ=255)

                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                       <  1:5045714/49‑1 (MQ=255)

                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGcccc                       >  1:2680372/1‑49 (MQ=255)

                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt                      <  1:5180673/50‑1 (MQ=255)

                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt                      <  1:886783/50‑1 (MQ=255)

                       agtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCt                      <  1:3829321/50‑1 (MQ=255)

                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                     <  1:3617561/50‑1 (MQ=255)

                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                     >  1:2843822/1‑50 (MQ=255)

                        gtCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTa                     >  1:1330097/1‑50 (MQ=255)

                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                    <  1:761945/50‑1 (MQ=255)

                         tCTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                    <  1:2995132/50‑1 (MQ=255)

                          cTGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTAt                    >  1:2858527/1‑49 (MQ=255)

                           tGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                  >  1:5335739/1‑50 (MQ=255)

                           tGCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                  >  1:4881473/1‑50 (MQ=255)

                            gCAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                  >  1:4368745/1‑49 (MQ=255)

                             cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                  >  1:5575078/1‑48 (MQ=255)

                             cAAAAAAATGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTAc                 <  1:2661931/49‑1 (MQ=255)

                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTa                  >  1:2087923/1‑47 (MQ=255)

                              aaaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAg               <  1:2520288/50‑1 (MQ=255)

                               aaaaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGa              <  1:1321245/50‑1 (MQ=255)

                                 aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt            >  1:3120669/1‑50 (MQ=255)

                                 aaaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt            >  1:4653713/1‑50 (MQ=255)

                                  aaaTGGAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt            >  1:1464677/1‑49 (MQ=255)

                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt            >  1:3322173/1‑49 (MQ=255)

                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACt            >  1:2593335/1‑49 (MQ=255)

                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc           <  1:4166193/50‑1 (MQ=255)

                                  aaaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTc           <  1:1994700/50‑1 (MQ=255)

                                   aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca          >  1:5065014/1‑50 (MQ=255)

                                   aaTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTca          >  1:2496987/1‑50 (MQ=255)

                                    aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac         <  1:5484260/50‑1 (MQ=255)

                                    aTGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac         <  1:3971411/50‑1 (MQ=255)

                                     tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcaca        <  1:507852/50‑1 (MQ=255)

                                     tGAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTcac         >  1:227311/1‑49 (MQ=255)

                                      gAAATTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACaa       >  1:3649291/1‑50 (MQ=255)

                                      aaaaTTGGGTGTTTG‑AACCCGGCGGTTCGCCCCTATTACAGACTCACAAc      <  1:4155511/49‑1 (MQ=255)

                                       aaaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc      >  1:1786370/1‑50 (MQ=255)

                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc     <  1:2427753/50‑1 (MQ=255)

                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAcc     <  1:2813181/50‑1 (MQ=255)

                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc      >  1:5214572/1‑49 (MQ=255)

                                        aaTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAAc      >  1:2428795/1‑49 (MQ=255)

                                         aTTGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACca    >  1:2092467/1‑50 (MQ=255)

                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac   <  1:5028871/50‑1 (MQ=255)

                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac   <  1:3161297/50‑1 (MQ=255)

                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac   <  1:6036174/50‑1 (MQ=255)

                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac   <  1:132829/50‑1 (MQ=255)

                                          ttGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcac   <  1:1083077/50‑1 (MQ=255)

                                           tGGGTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca  >  1:3806235/1‑50 (MQ=255)

                                            gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca  <  1:233532/49‑1 (MQ=255)

                                            gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca  <  1:2429406/49‑1 (MQ=255)

                                            gggTAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACcaca  <  1:243631/49‑1 (MQ=255)

TTAGTAGTCAACCGCAGTGAGTGAGTCTGCAAAAAAATGAAATTGGGCAGTTGAAACCAGACGTTTCGCCCCTATTACAGACTCACAACCACA  >  NC_000913/12039‑12131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`