| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,154,362 | C→T | A84V (GCC→GTC) | mltG → | endolytic murein transglycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,154,362 | 0 | C | T | 95.2% | 301.6 / 3.7 | 83 | A84V (GCC→GTC) | mltG | endolytic murein transglycosylase |
| Reads supporting (aligned to +/- strand): ref base C (1/3); new base T (33/46); total (34/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.41e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.53e-01 | |||||||||||
TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCT > NC_000913/1154316‑1154407 | tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg < 1:3256261/49‑1 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg < 1:1788496/49‑1 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCg < 1:3922740/49‑1 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 1:772408/49‑1 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 1:5279297/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc < 1:1215017/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt < 1:2846129/50‑1 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACtt < 1:2071222/50‑1 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACtt < 1:5151334/50‑1 (MQ=255) tGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTa > 1:5930623/1‑50 (MQ=255) gctgctGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTAc < 1:252875/49‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:1181441/50‑1 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 1:490707/1‑50 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 1:4058837/1‑50 (MQ=255) gctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt > 1:5885196/1‑50 (MQ=255) gctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt > 1:1934673/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc < 1:1364510/48‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:4143349/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt < 1:4692519/49‑1 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCt < 1:3115874/49‑1 (MQ=255) tgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:2531284/1‑49 (MQ=255) tgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt > 1:1106985/1‑49 (MQ=255) cGTATCGAACCGGATCTTTCTCGCTTTAAAGTCGGGACTTACCGCTTTa < 1:1160988/49‑1 (MQ=38) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCttt < 1:1217970/48‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCttt < 1:3580933/48‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 1:1905310/49‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 1:4327672/49‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca < 1:50096/50‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:5774303/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca < 1:420450/50‑1 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac < 1:4343202/50‑1 (MQ=255) aTCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc > 1:1667534/1‑50 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:2039875/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg < 1:4980382/50‑1 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:5126323/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:3489604/1‑48 (MQ=255) gAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCa < 1:5539395/50‑1 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:1175259/1‑47 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:2381956/1‑47 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAg < 1:120376/50‑1 (MQ=255) aaCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAg < 1:5162383/50‑1 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:268237/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCg > 1:4444087/1‑46 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGa < 1:3958206/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt < 1:2701289/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt < 1:2182045/50‑1 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 1:155734/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATg < 1:5248278/50‑1 (MQ=255) cGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATg < 1:459677/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa > 1:148040/1‑50 (MQ=255) ggATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGa < 1:551316/50‑1 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc > 1:1803562/1‑50 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc > 1:2866931/1‑50 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 1:3255398/1‑50 (MQ=255) cTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt > 1:2729999/1‑50 (MQ=255) tttCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTg > 1:4257733/1‑50 (MQ=255) ttCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc > 1:3473583/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc < 1:4875863/45‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc < 1:2111144/45‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCg < 1:2878286/46‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCg < 1:618345/46‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt < 1:5529512/47‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcg > 1:383056/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc < 1:2071024/49‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgc < 1:1691220/49‑1 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACAGCAGATGACCg < 1:4491209/46‑1 (MQ=255) tctcACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGt < 1:2771266/47‑1 (MQ=255) ctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:3428608/1‑50 (MQ=255) ctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcg < 1:4616308/49‑1 (MQ=255) cACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:199859/1‑48 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc < 1:3981128/47‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCgag < 1:2710741/50‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCgag < 1:2488039/50‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 1:2220212/49‑1 (MQ=255) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:5732742/1‑46 (MQ=255) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:109241/1‑46 (MQ=255) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCgaga < 1:2804730/50‑1 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGc > 1:2933618/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:1656597/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:347503/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:3460984/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:179630/1‑50 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 1:4418672/49‑1 (MQ=255) | TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCT > NC_000913/1154316‑1154407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |