| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,697,216 | T→C | intergenic (‑164/+57) | uidR ← / ← hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,697,216 | 0 | T | C | 99.0% | 380.9 / ‑3.8 | 95 | intergenic (‑164/+57) | uidR/hdhA | DNA‑binding transcriptional repressor UidR/7‑alpha‑hydroxysteroid dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (42/52); total (42/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.28e-01 | |||||||||||
GTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC > NC_000913/1697170‑1697262 | gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtga > 1:6030649/1‑50 (MQ=255)gTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtg < 1:5995658/49‑1 (MQ=255) ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:1093292/1‑50 (MQ=255) ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:3879809/1‑50 (MQ=255) ttAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat < 1:1340396/50‑1 (MQ=255) tAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:957400/1‑49 (MQ=255) aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatg < 1:4223226/49‑1 (MQ=255) aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatg < 1:4759650/49‑1 (MQ=255) aaCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgat > 1:2399227/1‑48 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatga < 1:3178772/49‑1 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatga < 1:4813943/49‑1 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCtgatga < 1:832176/49‑1 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg > 1:4733625/1‑50 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg < 1:181430/50‑1 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg < 1:5869824/50‑1 (MQ=255) aCCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAg < 1:1889582/50‑1 (MQ=255) ccAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGt > 1:5893603/1‑50 (MQ=255) cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt > 1:1251986/1‑50 (MQ=255) cAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt < 1:1499873/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:747703/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:2075061/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:1232864/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGttt < 1:4686776/50‑1 (MQ=255) aaTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGtt > 1:5374574/1‑49 (MQ=255) aTAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTa > 1:1497794/1‑50 (MQ=255) aGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc > 1:5231825/1‑50 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc < 1:1862011/49‑1 (MQ=255) gCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATc < 1:327140/49‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc < 1:3240473/50‑1 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc > 1:2886498/1‑50 (MQ=255) ccGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATccc > 1:2105598/1‑50 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:3951288/1‑50 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:750730/1‑50 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:5140358/1‑50 (MQ=255) cGTGATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCg > 1:3708531/1‑50 (MQ=255) gTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCgg < 1:5432764/50‑1 (MQ=255) gATTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGt > 1:5699538/1‑49 (MQ=255) aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCggga < 1:649232/49‑3 (MQ=39) aTTTGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTa > 1:1480788/1‑49 (MQ=255) aTTTGGCTGCCAGTTATGTAGCAGAGACGCTGATGAGTTTATCCCGGTaa < 1:24273/50‑1 (MQ=38) tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac < 1:3785129/49‑1 (MQ=255) tGGCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaac > 1:4652019/1‑49 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac < 1:1203689/50‑1 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaac < 1:1352547/50‑1 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa < 1:1925889/49‑1 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa > 1:3559226/1‑49 (MQ=255) gCTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAaacaa < 1:5749315/49‑1 (MQ=255) cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca < 1:4718258/50‑1 (MQ=255) cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca < 1:4500039/50‑1 (MQ=255) cTGCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAacaaca > 1:3891758/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:285789/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:3116395/1‑50 (MQ=255) gCCAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:4735954/1‑50 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac < 1:2201381/48‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac < 1:4656728/48‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAacac < 1:4671108/48‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc < 1:3834182/50‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgc < 1:4862334/50‑1 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg > 1:1011169/1‑49 (MQ=255) ccAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacg < 1:418051/49‑1 (MQ=255) cAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgca > 1:3657125/1‑50 (MQ=255) cAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgca < 1:5512037/50‑1 (MQ=255) cAGTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgca > 1:4872766/1‑50 (MQ=255) cAGTTATTTAGCAGAGACGCTGATGAGGTTATCCCGGTAAACAAcacgca > 1:5843992/1‑50 (MQ=39) gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg < 1:4947309/50‑1 (MQ=255) gTTATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAAcacgcacg > 1:5225417/1‑50 (MQ=255) ttATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACgg > 1:4847663/1‑50 (MQ=255) ttATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACgg < 1:3701739/50‑1 (MQ=255) tATTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgt > 1:3039543/1‑50 (MQ=255) aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt > 1:941542/1‑50 (MQ=255) aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgt < 1:5282234/49‑1 (MQ=255) aTTTAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgt < 1:3129678/49‑1 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg < 1:487453/50‑1 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttg > 1:5066574/1‑50 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt < 1:630173/49‑1 (MQ=255) tttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgtt < 1:540919/49‑1 (MQ=255) ttAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt > 1:2338055/1‑50 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 1:385484/1‑50 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt > 1:5221532/1‑50 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt < 1:1324964/49‑1 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt < 1:5477628/49‑1 (MQ=255) tAGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgt < 1:3505055/49‑1 (MQ=255) aGCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGgttgtt < 1:4169020/49‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa < 1:3917496/50‑1 (MQ=255) gCAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTa < 1:545920/50‑1 (MQ=255) cAGAGACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAc > 1:2286320/1‑50 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACGACACGCACGGTTGTTTAcc < 1:4776581/50‑1 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc < 1:2769499/50‑1 (MQ=255) agagACGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTAcc > 1:1616645/1‑50 (MQ=255) gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg < 1:5402862/50‑1 (MQ=255) gagaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCg < 1:4302945/50‑1 (MQ=255) agaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCgg < 1:4963636/50‑1 (MQ=255) gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt > 1:455094/1‑50 (MQ=255) gaCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGt > 1:1908033/1‑50 (MQ=255) aCGCTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTc > 1:1541893/1‑50 (MQ=255) | GTTAACCAATAGCCGTGATTTGGCTGCCAGTTATTTAGCAGAGACGTTGATGAGTTTATCCCGGTAAACAACACGCACGGTTGTTTACCGGTC > NC_000913/1697170‑1697262 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |