mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 32 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 195,495 | 0 | A | G | 71.1% | 144.1 / 81.8 | 91 | E198G (GAG→GGG) | ispU | undecaprenyl diphosphate synthase |
| * | NC_000913 | 1,560,033 | 0 | C | T | 69.0% | 85.5 / 52.5 | 58 | A299A (GCG→GCA) | ddpB | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| * | NC_000913 | 2,405,556 | 0 | T | C | 68.6% | 170.9 / 118.4 | 118 | intergenic (‑484/+147) | nuoA/lrhA | NADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA |
| * | NC_000913 | 2,151,420 | 0 | C | T | 62.0% | 115.7 / 151.5 | 121 | T79M (ACG→ATG) | yegJ | DUF2314 domain‑containing protein YegJ |
| * | NC_000913 | 3,618,342 | 0 | T | G | 61.9% | 4.8 / 19.2 | 21 | G189G (GGT→GGG) | nikE | Ni(2(+)) ABC transporter ATP binding subunit NikE |
| * | NC_000913 | 3,815,801 | 0 | A | . | 55.9% | 102.2 / 149.7 | 59 | intergenic (‑33/+62) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| * | NC_000913 | 1,943,125 | 0 | G | A | 54.9% | 27.7 / 142.4 | 91 | G155D (GGC→GAC) | znuC | Zn(2(+)) ABC transporter ATP binding subunit |
| * | NC_000913 | 2,898,938 | 0 | T | C | 51.8% | 0.8 / 92.1 | 56 | I161V (ATC→GTC) | ygcU | putative FAD‑containing dehydrogenase |
| * | NC_000913 | 3,585,086 | 0 | A | C | 38.8% | 88.4 / 11.5 | 49 | Y580D (TAC→GAC) | ggt | glutathione hydrolase proenzyme |
| * | NC_000913 | 941,713 | 0 | T | G | 38.6% | 95.3 / 23.6 | 57 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 4,070,462 | 0 | T | C | 34.4% | 68.2 / 63.8 | 61 | intergenic (‑61/+53) | yihR/yihS | putative aldose 1‑epimerase YihR/sulfoquinovose isomerase |
| * | NC_000913 | 4,223,597 | 0 | C | T | 33.3% | 60.1 / 20.5 | 45 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |
| * | NC_000913 | 2,984,718 | 0 | G | C | 31.4% | 70.1 / 18.3 | 35 | P292R (CCG→CGG) | yqeF | putative acyltransferase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 31.4% | 225.5 / 159.9 | 156 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,984,441 | 0 | A | C | 29.8% | 125.2 / 10.6 | 57 | G384G (GGT→GGG) | yqeF | putative acyltransferase |
| * | NC_000913 | 2,029,274 | 0 | C | T | 29.5% | 77.3 / 14.8 | 44 | K31K (AAG→AAA) | yedI | conserved inner membrane protein YedI |
| * | NC_000913 | 4,331,790 | 0 | T | G | 27.3% | 141.5 / 10.9 | 55 | V430G (GTT→GGT) | proP | osmolyte:H(+) symporter ProP |
| * | NC_000913 | 1,015,516 | 0 | G | T | 27.2% | 197.6 / 35.5 | 103 | intergenic (+57/‑199) | pqiC/rmf | intermembrane transport lipoprotein PqiC/ribosome modulation factor |
| * | NC_000913 | 1,669,508 | 0 | T | A | 26.8% | 147.6 / 13.1 | 56 | I29F (ATT→TTT) | ynfL | putative DNA‑binding transcriptional regulator |
| * | NC_000913 | 4,168,247 | 0 | A | G | 26.2% | 286.5 / 120.4 | 149 | intergenic (+47/‑125) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |