| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,948,805 | (G)6→7 | coding (1165/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,948,799 | 1 | . | G | 97.1% | 125.4 / ‑2.3 | 34 | coding (1171/1521 nt) | yifB | putative magnesium chelatase YifB |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base G (15/18); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 | |||||||||||
AACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948752‑3948843 | aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gg > 1:774569/1‑50 (MQ=255)aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gg > 1:2376904/1‑50 (MQ=255)aaCGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑g < 1:1256780/49‑1 (MQ=255) ggTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑ggggg > 1:284146/1‑50 (MQ=255) gTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggg > 1:608333/1‑50 (MQ=255) ggCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt > 1:970581/1‑48 (MQ=255) gcgcTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑gggggggt < 1:2491345/49‑3 (MQ=255) tgctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTaa > 1:1459266/1‑50 (MQ=255) gctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt > 1:994940/1‑50 (MQ=255) ctTTCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAAt < 1:1627897/49‑1 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATgg > 1:1670556/1‑50 (MQ=255) tttCTCCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGGGGTAATgg > 1:1617013/1‑50 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGa < 1:3896243/49‑1 (MQ=255) ctcCCGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGa < 1:3857281/49‑1 (MQ=255) ccGGCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGAt < 1:3080960/47‑1 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCGGGGGGGGTGGTAATGGGAtctc > 1:3083534/1‑49 (MQ=255) ggCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCa < 1:2787387/50‑1 (MQ=255) gCACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAg < 1:2778319/50‑1 (MQ=255) cACTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt < 1:2042181/50‑1 (MQ=255) aCTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:2407821/1‑49 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:1815065/50‑1 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:3337169/50‑1 (MQ=255) cTACCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga < 1:1993758/50‑1 (MQ=255) caCCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGt > 1:873373/2‑47 (MQ=255) aCCGTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:1971715/1‑48 (MQ=255) gTTTTACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGAt < 1:2990878/50‑1 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTga > 1:429375/1‑44 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:3503519/50‑1 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:3828756/50‑1 (MQ=255) ttttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc < 1:3552507/50‑1 (MQ=255) tttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATc > 1:1849763/1‑49 (MQ=255) ttACTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCg < 1:1148398/49‑1 (MQ=255) cTCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGc < 1:1835175/50‑1 (MQ=255) tCAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCg > 1:782431/1‑50 (MQ=255) cAAAATGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCgg > 1:1474121/1‑50 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:408131/1‑50 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt > 1:510957/1‑50 (MQ=255) aaaaTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGt < 1:1362566/50‑1 (MQ=255) aaaTGCCG‑GGGGGGTGGCAATGGGATCTCCAGTGAGAGATCGAAGCGGTc > 1:872555/1‑50 (MQ=255) aaaTGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCg < 1:3122890/50‑1 (MQ=255) aTGCCG‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCga < 1:2425210/50‑1 (MQ=255) | AACGGTGGCGCTGCTTTCTCCCGGCACTACCGTTTTACTCAAAATGCC‑‑GGGGGGTGGTAATGGGATCTCCAGTGAGAGATCGAAGCGGTCGA > NC_000913/3948752‑3948843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |