| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 687,860 | Δ1,185 bp | IS5‑mediated | insH‑3 | insH‑3 |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 687860 | 689044 | 1185 | 59 [0] | [0] 60 | insH‑3 | insH‑3 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 687859 | 0 (0.000) | 54 (1.070) | 38/96 | 0.0 | 100% | noncoding (1187/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 689045 = | 0 (0.000) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC > 1:672651/1‑50TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC < 1:1874994/50‑1 ATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT > 1:538470/1‑50 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:1080570/50‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:3905255/50‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTT < 1:760368/50‑1 TCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCT < 1:2731515/49‑1 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG > 1:3593110/1‑50 GTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAG < 1:2848986/50‑1 TCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGG < 1:2291296/50‑1 TGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGT > 1:234197/1‑49 CAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAA < 1:191130/49‑1 CAACTTTATTGTGCAGTGTTGGGCCTGTTAGGGAAGGTGCCTTAGGTA < 1:2713412/48‑1 AACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACA > 1:716289/1‑50 AACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACA < 1:849134/50‑1 AACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACA < 1:3703955/50‑1 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT < 1:1565573/50‑1 ACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACAT < 1:664774/50‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:1892125/50‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT > 1:3063380/1‑50 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:1128947/50‑1 CTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATT < 1:800654/50‑1 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG > 1:2498474/1‑50 TATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTA < 1:1325321/49‑1 ATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAG < 1:1718224/49‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:203574/50‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCT < 1:1965497/50‑1 CAGTGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGC > 1:2576582/1‑49 TGTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAA < 1:1021847/50‑1 GTTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAAT > 1:1309247/1‑50 TTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATG < 1:3399273/50‑1 TTGTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAAT < 1:554138/49‑1 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAATTGT > 1:3072487/1‑49 GTGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGT > 1:3031372/1‑49 TGCCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAA < 1:1394238/50‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAG < 1:428130/50‑1 CCTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAA < 1:3201362/49‑1 CTGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTA > 1:2957748/1‑46 TGTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGA > 1:664701/1‑49 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:1176306/1‑50 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:21044/1‑50 GTTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA > 1:3748123/1‑50 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA < 1:734638/49‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATA < 1:447421/49‑1 TTAGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGAT < 1:2713749/48‑1 AGGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATT < 1:3407813/49‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC < 1:1044550/50‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC < 1:3953330/50‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC < 1:3734479/50‑1 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC > 1:3703449/1‑50 GGGAAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGC < 1:3667338/50‑1 AAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT < 1:436449/50‑1 AAGGTGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGT < 1:334969/50‑1 TGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTA < 1:2816404/50‑1 TGCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTA < 1:3037519/50‑1 GCCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT > 1:2761180/1‑50 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > 1:1672825/1‑50 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT < 1:2272536/49‑1 CCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTAT < 1:1296593/49‑1 TTATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/687810‑687859‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCTTAGGTAACATTTAGTTTGGCTAAATGTAAAGATATTGCTGTTTTATT > NC_000913/689045‑689093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |