| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 42 [0] | [0] 39 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 37 (0.740) | 27/96 | 0.3 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA < 1:1245210/49‑1GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1746849/1‑49GCGATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1673732/1‑49 GATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAG > 1:3315281/1‑50 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTGATCGGTATTATAG > 1:920903/1‑49 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:3438071/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:2935575/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:28821/50‑1 ATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGC < 1:226364/50‑1 TGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCA < 1:2576525/50‑1 TTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAAT > 1:1975179/1‑49 TTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCA < 1:1756794/49‑1 TCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAA < 1:1819611/49‑1 CGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAA < 1:591390/49‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACC < 1:3142581/50‑1 GCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAAC < 1:1943818/49‑1 CGCTATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAA < 1:3726611/49‑1 ATCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA > 1:599951/1‑49 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACA < 1:203365/50‑1 TCAGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCA < 1:3084789/48‑1 AGGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACAT < 1:2521140/49‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:1904272/50‑1 GGGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATAT < 1:1352661/50‑1 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:300262/1‑50 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:2053215/1‑50 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:3511014/1‑50 GGTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATG > 1:1573090/1‑50 GTAAA‑TTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGC < 1:1604281/50‑1 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG > 1:992340/3‑50 aaTTATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCG < 1:3314774/48‑1 ATAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCC < 1:839777/49‑1 TAGTCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCA < 1:1282829/49‑1 TCATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATT < 1:436610/50‑1 CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 1:2889808/1‑50 CATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG > 1:2169939/1‑50 ATCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTG < 1:3794126/49‑1 TCGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT < 1:903807/50‑1 CGGTATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTT > 1:376222/1‑49 TATTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACA < 1:3072306/50‑1 TTATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAA < 1:3141061/50‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:723261/49‑1 ATAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG < 1:834387/49‑1 GCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/765158‑765207‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTAGCAATCAAACCGAAGCCACATATGCGCGGCCAGATTGTTGACAAAG > NC_000913/770613‑770660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |