| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 55 [0] | [0] 54 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 54 (1.050) | 40/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997821‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTT < 1:2484253/50‑1TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTT < 1:3796454/49‑1 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:801458/1‑50 CATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG > 1:2772221/1‑50 ATTTAAAGGCATTATCATATTTACGAAGGGATCAGGATGATAACGTTTGC > 1:1173783/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGC > 1:585156/1‑50 ATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTG < 1:3286490/49‑1 TTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCC > 1:2327632/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1858449/1‑50 TTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1547216/1‑50 TAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:1975092/1‑49 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:653314/1‑48 AAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCG > 1:2926198/1‑48 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG > 1:1311701/1‑50 AAGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAG < 1:249454/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:3787259/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:3451198/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:2913059/1‑50 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:375149/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:2545045/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG < 1:150279/50‑1 AGGCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGG > 1:1830750/1‑50 GCATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC < 1:2648269/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCA < 1:2884977/50‑1 CATTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTC > 1:2221248/1‑49 TTATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAAT > 1:2975475/1‑50 ATCATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTC > 1:2932090/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCT > 1:2291725/1‑50 ATATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCC < 1:325688/49‑1 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:1238182/1‑50 TATTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTT > 1:3870445/1‑50 TTTACGAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTT > 1:3743822/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:545950/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:879107/1‑50 GAAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:2148955/1‑50 AAGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCC > 1:1535901/1‑49 AGAGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCG > 1:1694620/1‑49 AGATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAC > 1:3224639/1‑50 GATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACT > 1:2510073/1‑50 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC < 1:598901/50‑1 ATCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTC > 1:1799360/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:1131215/1‑50 TCAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:2947882/1‑50 CAGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCG > 1:394888/1‑49 AGGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:3389174/1‑50 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:3609292/1‑49 GGATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCA > 1:1171313/1‑49 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA < 1:3311665/50‑1 GATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACA > 1:535516/1‑50 ATGATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACAT < 1:62671/50‑1 GATAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAA > 1:3561565/1‑50 TAACGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATA > 1:2666430/1‑50 CGTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAACACGC > 1:62502/1‑50 GTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > 1:1694921/1‑50 TCATTTAAAGGCATTATCATATTTACGAAGAGATCAGGATGATAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/997821‑997867‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCC > NC_000913/1004686‑1004734 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |