| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 53 [0] | [0] 50 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 43 (1.120) +CAGATAATTCAA |
30/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |||||||||||| TAAGAGTCTCACCTCCTTATTTGAGTAATCTCTTGATGCTAAGAACTATC < 1:452865/50‑1 TCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAA > 1:645387/1‑50 TCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:2352634/1‑50 CACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATT > 1:689343/1‑49 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC < 1:3607488/49‑1 ACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTC > 1:2965365/1‑49 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG > 1:3805146/1‑50 CTGATTTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCG < 1:1772803/50‑1 TTTAGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCT > 1:2053688/1‑50 AGTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGT > 1:1702655/1‑49 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:241818/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA > 1:394928/1‑50 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGA < 1:1215731/50‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:3347577/49‑1 GTAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTG < 1:953198/49‑1 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:13289/1‑50 TAATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGAT > 1:3328589/1‑50 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGA < 1:940300/50‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:3346497/49‑1 ATCTCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATG < 1:1257764/49‑1 TCTTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG > 1:2269543/1‑50 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:807499/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG > 1:1013732/1‑49 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:3665452/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAG < 1:1115497/48‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:2401281/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:3708985/47‑1 TTGATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATA < 1:1586854/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:2162850/47‑1 GATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGG < 1:2113455/47‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:3920017/50‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATT < 1:515353/50‑1 ATGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAAT < 1:2915790/49‑1 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA > 1:978437/1‑50 TGCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTA < 1:1474309/50‑1 GCTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT > 1:2249533/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATG > 1:1645893/1‑50 CTAAGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTAT < 1:2356954/49‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:1459354/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTT < 1:3885093/50‑1 AGAACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTT < 1:3633216/49‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTT < 1:1680222/50‑1 ACTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTT > 1:1850364/1‑49 CTATCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTA < 1:3141077/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:653969/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT < 1:2344035/50‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:2259772/1‑50 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:2334788/48‑1 TCAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAC < 1:2899166/48‑1 CAGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGT > 1:2741730/1‑49 AGATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTG < 1:2548111/49‑1 ATAATTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAT < 1:424009/50‑1 TTCAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGA < 1:3082025/50‑1 CAAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAA > 1:3897899/1‑49 AAAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAAT < 1:1467145/49‑1 AAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > 1:3835698/1‑50 |||||||||||| TAAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1197088‑1197136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAA > NC_000913/1223093‑1223141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |