| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,388,889 | Δ9,734 bp | ycjG–[uspE] | ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH‑4, ynaJ, [uspE] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1388889 | 1398622 | 9734 | 52 [0] | [0] 55 | ycjG–[uspE] | ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH‑4,ynaJ,[uspE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1388888 | 0 (0.000) | 51 (1.020) | 37/96 | 0.0 | 100% | intergenic (‑77/‑42) | tpx/ycjG | lipid hydroperoxide peroxidase/L‑Ala‑D/L‑Glu epimerase |
| ? | NC_000913 | 1398623 = | 0 (0.000) | intergenic (‑1/+151) | uspE/fnr | universal stress protein with a role cellular motility/DNA‑binding transcriptional dual regulator FNR | |||||
CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388841‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:63892/1‑49 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACA < 1:242490/50‑1 GTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTA > 1:760223/1‑48 CACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:1558489/1‑50 CACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGG > 1:1683435/1‑50 ACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGG > 1:2199445/1‑50 TAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCC > 1:1527247/1‑50 GTTTATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCT > 1:1634330/1‑49 TATGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTAC < 1:730743/49‑1 TGCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC < 1:1655972/50‑1 GCTAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAAC > 1:1004470/1‑49 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:2190529/1‑50 TAACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAAC > 1:1719124/1‑50 ACTGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACT < 1:93368/49‑1 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:358337/1‑49 TGTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGT > 1:385833/1‑49 GTCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTC > 1:2206138/1‑49 TCAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCA < 1:1452829/49‑1 CAATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC > 1:1652075/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACG > 1:1862749/1‑50 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:3397019/49‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:1864801/49‑1 AATAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAAC < 1:3642757/49‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCA < 1:3191878/50‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCA < 1:3441295/50‑1 TAACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCA < 1:2157234/50‑1 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:1282374/1‑50 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:2024284/1‑50 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:2905972/1‑50 AACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG > 1:3118335/1‑50 ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGT > 1:1183088/1‑50 ACACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAG < 1:2820279/49‑1 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTT < 1:3015901/50‑1 CACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTT > 1:1750373/1‑50 ACAGCAAGCGCTGTTACAGTGTCTCCTTACATCAACTGTCAACGCAGTTT < 1:1428579/50‑1 ACAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTT > 1:1148294/1‑50 CAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG < 1:1204669/50‑1 CAGCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTG < 1:142114/50‑1 GCAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTA < 1:2390100/50‑1 CAAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAA < 1:3514584/50‑1 AAACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT < 1:507691/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATT < 1:2465449/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATT < 1:736899/50‑1 AACGCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAAT > 1:2046243/1‑49 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAA < 1:3101294/50‑1 GCTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:1336591/1‑49 CTATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAA < 1:3633269/50‑1 ATTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAA > 1:2845979/1‑46 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAGAGAT > 1:3746219/1‑50 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > 1:3430647/1‑50 TTACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > 1:366974/1‑50 TACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > 1:2563076/1‑49 CGTCACACCTAGTTTATGCTAACTGTCAATAACACAGCAAACGCTATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1388841‑1388888‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tACAGGGTCTCCTTACAACAACTGTCAACGCAGTTTGTAATTAAAAGAT > NC_000913/1398623‑1398670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |