| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 53 [0] | [0] 51 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 51 (0.990) | 38/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509515‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:1143498/1‑50 TCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAA > 1:3943266/1‑49 CCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACA < 1:3473024/49‑1 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:1703646/1‑49 CGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAA > 1:1930529/1‑49 GTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAA > 1:1008/1‑49 CACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAA > 1:3181252/1‑49 ACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACA > 1:1102703/1‑50 CTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:2636521/1‑50 TCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACAC > 1:2582935/1‑49 CTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCA > 1:2122132/1‑50 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:2433187/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATT < 1:1849514/49‑1 ACACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCAT < 1:2223516/48‑1 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:161691/1‑50 ACCCGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCG > 1:1669585/1‑50 CGCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAG < 1:3267824/50‑1 GCGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGG < 1:2700630/50‑1 CGCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC < 1:255189/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCA < 1:623927/50‑1 GCCGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGC > 1:2189429/1‑49 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:288305/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:1839972/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:3901630/1‑50 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT < 1:2258669/50‑1 CGGAAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAAT > 1:2376689/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT > 1:1892169/1‑50 AAGGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGT < 1:2538643/50‑1 GGCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGT > 1:1974048/1‑50 GCGGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTT < 1:1226686/50‑1 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:449445/1‑49 GGTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTT > 1:3075667/1‑49 GTTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAA < 1:2847980/50‑1 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:3816410/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:450713/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:2784079/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAAT > 1:1454531/1‑50 TTATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTAAAT < 1:2931908/50‑1 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:3018110/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:1861380/1‑50 ATATGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCG > 1:565389/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCA > 1:946591/1‑50 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTC < 1:2020462/49‑1 TGGTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTC < 1:735336/49‑1 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT > 1:410216/1‑50 GTTTCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATT < 1:2158965/50‑1 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:1221641/1‑50 TCTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGA < 1:115042/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG < 1:2167071/49‑1 CTAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAG > 1:1893631/1‑49 TAAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > 1:3302298/1‑50 ATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1509515‑1509561‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAACAAAAACACCATTGCGCAGGCAATGGTGTTTAATCGTCATTGAGGA > NC_000913/1555763‑1555811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |