| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,872,030 | Δ1,437 bp | [dgcJ] | [dgcJ] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1872030 | 1873466 | 1437 | 38 [0] | [0] 40 | [dgcJ] | [dgcJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1872029 | 0 (0.000) | 37 (0.740) | 34/96 | 0.1 | 100% | intergenic (+169/‑12) | cdgI/dgcJ | putative c‑di‑GMP binding protein CdgI/putative diguanylate cyclase DgcJ |
| ? | NC_000913 | 1873467 = | 0 (0.000) | coding (1427/1491 nt) | dgcJ | putative diguanylate cyclase DgcJ | |||||
GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871982‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGAT < 1:2258296/50‑1 CCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATG > 1:3584316/1‑50 CGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGC > 1:2227562/1‑50 CAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGT < 1:2753921/50‑1 ATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT < 1:2143636/50‑1 TCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTAT > 1:2199453/1‑49 CTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCT < 1:3702482/50‑1 TTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTT > 1:454157/1‑50 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTC < 1:3927217/49‑1 TATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTT < 1:1342807/48‑1 ATCTGGTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCC > 1:2276353/1‑49 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATG < 1:1790700/48‑1 GTTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGAT < 1:1820606/47‑1 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGC < 1:3084994/50‑1 TTTTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGC < 1:3250484/50‑1 TTCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGT > 1:3642582/1‑50 TCTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:1976476/1‑50 CTCGTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTT > 1:3132948/1‑49 GTTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTAT < 1:3810558/49‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT < 1:3586510/50‑1 TTTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATAT > 1:1514062/1‑50 TTCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG > 1:674815/1‑50 TCACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATG < 1:2207773/49‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCA < 1:685735/50‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCA < 1:1161449/50‑1 ACTAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTC < 1:1483667/49‑1 TAACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAA > 1:2003276/1‑49 ACCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAAT < 1:54128/48‑1 CCGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG < 1:31909/50‑1 CGAAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:3298702/1‑49 AAGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAG > 1:856645/1‑47 AAGGAGATGCGTATAAAGCTTCAGATGAGCGTTTATATGTCAATAAGCAG < 1:1804956/50‑1 AGGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGA < 1:2936405/50‑1 GGAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > 1:2017940/1‑50 GAGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAA > 1:3657972/1‑49 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > 1:633423/1‑49 AGATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAAC > 1:2475172/1‑49 GATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > 1:3727379/1‑49 GCCGCAATCGAACTTTATCTGGTTTTCTCGTTTCACTAACCGAAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1871982‑1872029‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gATGCGTATAAAGCTTCCGATGAGCGTTTATATGTCAATAAGCAGAACA > NC_000913/1873467‑1873514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |