Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,997,112 Δ26,567 bp [tcyN]–[fliR] 32 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1997112 2023678 26567 45 [0] [0] 42 [tcyN]–[fliR] [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19971110 (0.000)41 (0.800) 31/98 0.2 100% coding (704/753 nt) tcyN cystine ABC transporter ATP binding subunit
?NC_000913 2023679 = 0 (0.000)intergenic (+1/‑289) fliR/rcsA flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA

TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997065‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC  >  NC_000913/2023679‑2023727
                                                                                                
TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC                                                <  1:3182482/50‑1
 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCCCGGTTCC                                               >  1:2991889/1‑50
  GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC                                               <  1:3360474/49‑1
          AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT                                      <  1:3165542/50‑1
               CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTTACGTTTATCAT                                 >  1:3552049/1‑50
               CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC                                   <  1:548976/48‑1
                   AGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTA                             <  1:3660626/50‑1
                    GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT                            <  1:628618/50‑1
                       ACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                         <  1:1187077/50‑1
                         TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                         >  1:3738498/1‑48
                         TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                         >  1:2518846/1‑48
                         TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                         >  1:3280174/1‑48
                         TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT                         >  1:1565791/1‑48
                          GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG                      >  1:1700715/1‑50
                           GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG                     <  1:1292035/50‑1
                           GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG                     <  1:722299/50‑1
                            CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA                    >  1:1368644/1‑50
                             GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT                   <  1:569773/50‑1
                             GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT                   >  1:2451559/1‑50
                             GGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGAT                   >  1:1211213/1‑50
                               GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA                 >  1:881187/1‑50
                                TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT                >  1:3708145/1‑50
                                TGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTAT                <  1:1657678/50‑1
                                  CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC              >  1:1460242/1‑50
                                  CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC              <  1:3318067/50‑1
                                  CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC              >  1:2013355/1‑50
                                  CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC              <  1:1477511/50‑1
                                  CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC              >  1:3573958/1‑50
                                    AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGA            <  1:2130562/50‑1
                                    AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG             >  1:367226/1‑49
                                     GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA           <  1:1189752/50‑1
                                      GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA          <  1:3898864/50‑1
                                      GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA          <  1:3874228/50‑1
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA          >  1:1669458/1‑49
                                       CTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA          >  1:1187014/1‑49
                                        TGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA        >  1:2580940/1‑50
                                          CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT       <  1:1711040/49‑1
                                            CGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA     >  1:255457/1‑49
                                             GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA   <  1:3920445/50‑1
                                             GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAA     <  1:3381170/48‑1
                                              GTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC  >  1:1091926/1‑50
                                                                                                
TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1997065‑1997111
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAC  >  NC_000913/2023679‑2023727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.