| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,798,370 | (TTC)4→3 | coding (124‑126/405 nt) | stpA ← | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2798361 | 2798363 | 3 | 48 [0] | [0] 49 | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2798364 = | 0 (0.000) | 41 (0.980) | 33/80 | 0.0 | 100% | coding (132/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity |
| ? | NC_000913 | = 2798360 | 0 (0.000) | coding (136/405 nt) | stpA | DNA‑binding transcriptional repressor StpA with RNA chaperone activity | |||||
CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG < 1:320968/49‑1CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTG > 1:2723864/1‑49 GAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGA < 1:1256098/47‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAA < 1:3323040/50‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 1:2156124/49‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGA < 1:2120773/49‑1 AAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:1025283/1‑48 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:3312012/1‑47 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:2974916/1‑47 AGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAG > 1:20515/1‑47 GAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGA < 1:3593412/50‑1 AAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA < 1:3637438/50‑1 AATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAAC < 1:3129360/50‑1 TGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAG < 1:307976/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCA < 1:3044727/50‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGC < 1:2563488/49‑1 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG > 1:3734305/1‑48 GAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAG < 1:3216228/48‑1 AAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAG > 1:1559700/1‑50 AAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCG < 1:2657883/50‑1 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:2026993/1‑50 AATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:595929/1‑50 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTG < 1:1844814/50‑1 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:351121/1‑49 ATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGT > 1:1320906/1‑49 TTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGA < 1:3634799/50‑1 TCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAA > 1:254116/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT > 1:1184399/1‑50 AGGGTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACT < 1:3737174/50‑1 GTTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGC < 1:2761818/50‑1 TTGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCA < 1:593931/50‑1 TGTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGG > 1:1009511/1‑47 GTCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAG < 1:109564/49‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAG < 1:422009/50‑1 TCACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGA < 1:2609922/49‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 1:657973/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 1:2703889/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCG < 1:2422984/50‑1 ACTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGC < 1:2741322/49‑1 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:1523284/1‑50 CTAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:3531502/1‑50 TAAAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGC > 1:2226867/1‑49 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:2020473/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAG > 1:405579/1‑50 AAGAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCA < 1:3284678/49‑1 GAAAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGA < 1:609611/50‑1 AAGACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAA > 1:565210/1‑49 GACGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAA < 1:1387184/50‑1 CGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:307449/1‑50 CGTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:1689410/1‑50 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:3880420/1‑49 GTGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAAT > 1:3174259/1‑49 TGAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTA < 1:464171/50‑1 GAAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:3422276/1‑50 AAGCAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:3243985/1‑49 AAGAAGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAG > 1:3243905/1‑49 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT < 1:1242549/50‑1 AGAACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCT > 1:2895511/1‑50 AACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGG < 1:461235/50‑1 ACAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC > 1:1857252/1‑50 CTTGAAGAAATGCTCGAAAAATTCAGGGTTGTCACTAAAGAAAGACGTGAAGAAGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2798420‑2798364‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaagaagaaCAGCAGCAGCGTGAACTGGCAGAGCGCCAGGAAAAAATTAGCACCTGGC < NC_000913/2798360‑2798312 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |