| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 29 [0] | [0] 29 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 28 (0.570) +GA |
25/94 | 0.4 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > NC_000913/3136382‑3136426 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:1939289/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:1058845/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:1637871/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT < 1:3142786/50‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTT > 1:2460074/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATT < 1:705663/49‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCAT < 1:3257763/48‑1 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATT < 1:2758817/50‑1 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA > 1:2895198/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTAC > 1:1074273/1‑49 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTA < 1:33122/48‑1 CATCAATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGA < 1:256071/50‑1 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:3568744/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACG > 1:2763652/1‑49 ATTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGA < 1:1809900/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGAC < 1:1638882/50‑1 TTGTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACG > 1:2913729/1‑50 GTGTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGC < 1:3633414/49‑1 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:945685/1‑49 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:1805869/1‑49 GTCACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCAT > 1:2344444/1‑49 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATC < 1:2059029/50‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT < 1:2841187/49‑1 ACCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:1042675/1‑49 CCCGCAGCGCATAGAACGCCATTTTGAATTTACGAACGGACGCATTAT > 1:886959/1‑48 GCATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:439519/1‑49 CATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:3229827/1‑49 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:2675382/50‑1 ATAGAACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:2657852/1‑50 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCATTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > NC_000913/3136382‑3136426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |