| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 62 [0] | [0] 60 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 59 (1.170) | 39/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:1084853/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:272606/1‑49 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:2886400/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:3940197/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:3640652/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:1122819/49‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:260992/1‑49 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:641189/1‑49 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:1724371/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:392309/49‑1 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:3067095/1‑49 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:3276077/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:1198296/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:1008642/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT < 1:1609654/50‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:724469/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:1294484/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:1884570/47‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:310807/49‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:3587081/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:1841402/1‑49 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAA < 1:3446112/50‑1 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:2641177/1‑50 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG < 1:269773/50‑1 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:1358426/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:2128582/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:1513459/1‑50 TGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTT > 1:1218821/1‑50 GAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG > 1:465373/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC < 1:176838/50‑1 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:2755378/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:2516151/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG < 1:2416587/50‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:3341091/1‑48 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCCTTCAG < 1:2073586/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:1344449/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:758085/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:3010172/49‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:92591/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:1379252/50‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:3226679/49‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:3363466/49‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCC < 1:81741/49‑1 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:1597318/48‑1 TCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGG > 1:2719054/1‑50 CTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGACATGCAGCGTCCGGG > 1:3059122/1‑49 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:958575/50‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:1219184/50‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:2254795/50‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAG < 1:72361/49‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:2847454/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:827716/49‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:910755/1‑50 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:913260/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:298110/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:1173380/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > 1:1956124/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG > 1:2625063/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:1308487/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:1316256/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:1381313/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:1309304/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |