| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 41 [0] | [0] 45 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 41 (0.800) | 32/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129349‑1129444 | aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:3577774‑M1/1‑48 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:1741195‑M1/1‑45 (MQ=255) tttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt < 1:3332906‑M1/50‑8 (MQ=255) ttGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctt > 1:603034‑M1/1‑42 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:3337357‑M1/49‑10 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta < 1:1742398‑M1/49‑10 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:528771‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:231747‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:3578385‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:3439092‑M1/49‑11 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaac < 1:2083096‑M1/50‑14 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:2930164‑M1/50‑16 (MQ=255) cgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacata > 1:3749897‑M1/1‑34 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:3381389‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:3359240‑M1/50‑18 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat < 1:646103‑M1/50‑18 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:1786092‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:820607‑M1/50‑22 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac < 1:879857‑M1/50‑26 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:82130‑M1/49‑25 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaa < 1:3159358‑M1/49‑25 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:2680759‑M1/50‑28 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:2684902‑M1/49‑33 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:2862278‑M1/1‑16 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:2280986‑M1/50‑35 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt < 1:407068‑M1/50‑36 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:2827227‑M1/1‑13 (MQ=255) ccGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt > 1:188617‑M1/1‑13 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:2760970‑M1/1‑11 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt < 1:594949‑M1/50‑40 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 1:2264615‑M1/50‑41 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 1:3165250‑M1/50‑41 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:133717‑M1/1‑10 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:1833699‑M1/1‑8 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:1170041‑M1/50‑43 (MQ=255) tGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc > 1:1202169‑M1/1‑7 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:618392‑M1/1‑5 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:1184069‑M1/1‑5 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcc < 1:2119225‑M1/49‑45 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg < 1:1355755‑M1/50‑47 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:2939963‑M1/1‑2 (MQ=255) | AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGG > NC_000913/1129349‑1129444 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |