| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 54 [0] | [0] 54 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 51 (1.040) | 40/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
CCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAAA > NC_000913/2998821‑2998918 | gtagatttgttacactccgctatagctttcttcagatctttatagcccAc > 1:991531‑M2/49‑50 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccAc < 1:1200172‑M2/2‑1 (MQ=255) tagatttgttacactccgctatagctttcttcagatctttatagcccACt < 1:1713757‑M2/3‑1 (MQ=255) gatttgttacactccgctatagctttcttcagatctttatagcccACTTa > 1:2626470‑M2/46‑50 (MQ=255) atttgttacactccgctatagctttcttcagatctttatagcccACTTAt < 1:378350‑M2/6‑1 (MQ=255) tttgttacactccgctatagctttcttcagatctttatagcccACTTAtt < 1:1419721‑M2/7‑1 (MQ=255) gttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:636142‑M2/41‑50 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaac < 1:3364012‑M2/11‑1 (MQ=255) ttacactccgctatagctttcttcagatctttatagcccACTTATTTaa > 1:55891‑M2/40‑49 (MQ=255) tacactccgctatagctttcttcagatctttatagcccACTTATTTaac > 1:3843284‑M2/39‑49 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaacaa > 1:1595374‑M2/38‑50 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:2881544‑M2/12‑1 (MQ=255) acactccgctatagctttcttcagatctttatagcccACTTATTTaaca < 1:1608846‑M2/12‑1 (MQ=255) cactccgctatagctttcttcagatctttatagcccACTTATTTaacaac > 1:1912595‑M2/37‑50 (MQ=255) actccgctatagctttcttcagatctttatagcccACTTATTTAACAACt < 1:3728030‑M2/15‑1 (MQ=255) ctccgctatagctttcttcagatctttatagcccACTTATTTAACAACtt > 1:3630317‑M2/35‑50 (MQ=255) ccgctatagctttcttcagatctttatagcccACTTATTTAACAACTTg > 1:3037158‑M2/33‑49 (MQ=255) cgctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaa < 1:87672‑M2/19‑1 (MQ=255) ctatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa < 1:3671034‑M2/21‑1 (MQ=255) tatagctttcttcagatctttatagcccACTTATTTAACAACTTGaaaa > 1:1021116‑M2/29‑49 (MQ=255) atagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAAt > 1:1817369‑M2/28‑49 (MQ=255) tagctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATaa < 1:707951‑M2/24‑1 (MQ=255) gctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAgg > 1:3062120‑M2/25‑50 (MQ=255) ctttcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgt < 1:1775164‑M2/27‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:993699‑M2/29‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGgtgt < 1:1694153‑M2/29‑1 (MQ=255) tcttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt > 1:3515560‑M2/21‑50 (MQ=255) cttcagatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGtt < 1:1988096‑M2/30‑1 (MQ=255) agatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTAc < 1:2507702‑M2/34‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:1964905‑M2/36‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:1090942‑M2/36‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:3611131‑M2/36‑1 (MQ=255) gatctttatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCt < 1:2982198‑M2/36‑1 (MQ=255) tatagcccACTTATTTACCAACTTGAAAATAAGGTGTTTTACCTg < 1:2972884‑M2/37‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:912052‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGtttt < 1:2869164‑M2/32‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTggg < 1:64995‑M2/39‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTgg < 1:3617262‑M2/38‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTgg < 1:1762130‑M2/38‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgtt < 1:3161069‑M2/41‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgt < 1:1432409‑M2/40‑1 (MQ=255) tatagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgt < 1:2011415‑M2/40‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:628606‑M2/43‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:3694667‑M2/43‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt < 1:1589394‑M2/43‑1 (MQ=255) tagcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGgttgt > 1:854696‑M2/7‑49 (MQ=255) agcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa > 1:3477542‑M2/6‑50 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTa < 1:1777846‑M2/45‑1 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc < 1:3724439‑M2/46‑1 (MQ=255) gcccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTAc < 1:2973196‑M2/46‑1 (MQ=255) cccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACa < 1:404118‑M2/47‑1 (MQ=255) ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa < 1:1020326‑M2/48‑1 (MQ=255) ccACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaa < 1:856050‑M2/48‑1 (MQ=255) aCTTATGTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACaaaa < 1:441613/50‑1 (MQ=255) | CCTTTCATAAAATATTCCATCAATCGTTTGTTAAAAGCGTAGATAACCACTTATTTAACAACTTGAAAATAAGGTGTTTTACCTGGGTTGTTACAAAA > NC_000913/2998821‑2998918 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |