| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 61 [0] | [0] 60 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 59 (1.170) | 41/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770194‑3770290 | gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct < 1:85104‑M2/1‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:1622732‑M2/45‑49 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:1136540‑M2/7‑1 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa > 1:692757‑M2/44‑50 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:3829930‑M2/7‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt < 1:3093706‑M2/8‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:375659‑M2/42‑50 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:2033345‑M2/42‑50 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc < 1:957591‑M2/10‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 1:1203622‑M2/40‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 1:2358009‑M2/40‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa < 1:905720‑M2/11‑1 (MQ=255) gccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:3600738‑M2/38‑50 (MQ=255) gccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:311288‑M2/38‑50 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:3729348‑M2/37‑49 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:391552‑M2/14‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:1907902‑M2/36‑49 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa < 1:597318‑M2/16‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa < 1:3602272‑M2/16‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:2441428‑M2/19‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:1576128‑M2/19‑1 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:2853954‑M2/28‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:1966434‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:1813636‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 1:1876245‑M2/23‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:347527‑M2/24‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:2503695‑M2/24‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:2568479‑M2/24‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:573820‑M2/26‑49 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:2692391‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:881587‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:3864008‑M2/26‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa < 1:3312106‑M2/26‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt < 1:3477426‑M2/27‑1 (MQ=255) aaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc < 1:40575‑M2/29‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:975533‑M2/31‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg > 1:1133425‑M2/20‑50 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:3115458‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc > 1:1537060‑M2/19‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:1985968‑M2/18‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt < 1:2719380‑M2/36‑1 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:2302771‑M2/15‑50 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt > 1:1633041‑M2/15‑50 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:1167381‑M2/37‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:1290235‑M2/37‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:1445934‑M2/37‑1 (MQ=255) atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt > 1:2083873‑M2/12‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:3287541‑M2/40‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:826926‑M2/9‑50 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:845253‑M2/9‑50 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:406441‑M2/8‑49 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:2614110‑M2/8‑49 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:627088‑M2/7‑48 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 1:329458‑M2/44‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 1:82313‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:3869175‑M2/45‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:227109‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:1224212‑M2/3‑50 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:1095946‑M2/48‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag > 1:2701808‑M2/2‑49 (MQ=255) | ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770194‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |