| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,888,432 | Δ18,167 bp | tnaC–bglG | 17 genes tnaC, tnaA, tnaB, mdtL, yidZ, yieE, yieF, adeP, yieH, cbrB, cbrC, yieK, yieL, bglH, bglB, bglF, bglG |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3888432 | 3906598 | 18167 | 52 [0] | [0] 49 | tnaC–bglG | tnaC,tnaA,tnaB,mdtL,yidZ,yieE,yieF,adeP,yieH,cbrB,cbrC,yieK,yieL,bglH,bglB,bglF,bglG |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3888431 | 0 (0.000) | 47 (0.940) | 35/96 | 0.0 | 100% | intergenic (+239/‑4) | mnmE/tnaC | 5‑carboxymethylaminomethyluridine‑tRNA synthase GTPase subunit/tnaAB operon leader peptide |
| ? | NC_000913 | 3906599 = | 0 (0.000) | intergenic (‑32/+254) | bglG/phoU | transcriptional antiterminator BglG/negative regulator of the pho regulon | |||||
AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888382‑3888480 | aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:2573947‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC > 1:2826387‑M1/1‑50 (MQ=255)aaaaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGC < 1:1779318‑M1/50‑1 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcg < 1:514782‑M1/50‑3 (MQ=255) aaaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCc > 1:185148‑M1/1‑48 (MQ=255) aaCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcga > 1:1918948‑M1/1‑47 (MQ=255) aCTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgac < 1:2770529‑M1/50‑5 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 1:1103059‑M1/50‑6 (MQ=255) ctctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgact < 1:1217502‑M1/50‑6 (MQ=255) tctGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgactt > 1:1874753‑M1/1‑44 (MQ=255) aGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttca < 1:1618665‑M1/48‑9 (MQ=255) gtgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcacca < 1:2613483‑M1/50‑12 (MQ=255) tgtAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccag < 1:1028021‑M1/50‑13 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:2456365‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagta > 1:742502‑M1/1‑36 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:3752785‑M1/49‑14 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:1764696‑M1/49‑14 (MQ=255) taataaTGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagt < 1:1577598‑M1/49‑14 (MQ=255) ataatGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtatt > 1:2412345‑M1/1‑34 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctc < 1:3053069‑M1/50‑20 (MQ=255) atGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattct < 1:3025015‑M1/49‑19 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct > 1:1378845‑M1/1‑30 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:214877‑M1/50‑21 (MQ=255) tGTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctct < 1:1207298‑M1/50‑21 (MQ=255) gTAGCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctg > 1:1800708‑M1/1‑29 (MQ=255) gCCTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtt < 1:3543091‑M1/50‑25 (MQ=255) ccTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggtta > 1:1326467‑M1/1‑25 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat < 1:367376‑M1/50‑27 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:3932013‑M1/1‑24 (MQ=255) cTCGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttat > 1:1576218‑M1/1‑24 (MQ=255) cGTGTCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgt > 1:631263‑M1/1‑22 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:1529773‑M1/50‑31 (MQ=255) tgtCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtca < 1:1546079‑M1/50‑31 (MQ=255) tCTTGCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcagg > 1:2504397‑M1/1‑18 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt > 1:2071862‑M1/1‑14 (MQ=255) gCGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttt < 1:2026330‑M1/49‑36 (MQ=255) cGAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggtttt < 1:2511132‑M1/49‑37 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:2054382‑M1/1‑12 (MQ=255) gAGGATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgc > 1:1982797‑M1/1‑12 (MQ=255) gATAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctg < 1:2276093‑M1/50‑42 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:3201806‑M1/50‑43 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:1288896‑M1/1‑8 (MQ=255) aTAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc < 1:10171‑M1/50‑43 (MQ=255) tAAGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgc > 1:2406274‑M1/1‑7 (MQ=255) aaGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg > 1:839942‑M1/1‑6 (MQ=255) aaGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcg > 1:2364745‑M1/1‑6 (MQ=255) aGTGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaa > 1:498410‑M1/1‑5 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:2213256‑M1/1‑3 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:187938‑M1/1‑3 (MQ=255) tGCcgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:1011173‑M1/1‑3 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatgca < 1:751698‑M1/50‑50 (MQ=255) ccgacttcaccagtattctctggttatgtcaggttttgcctgcgaatg > 1:2689358‑M1/1‑1 (MQ=255) | AAAAACTCTGAGTGTAATAATGTAGCCTCGTGTCTTGCGAGGATAAGTGCATTATGAATATCTTACATATATGTGTGACCTCAAAATGGTTCAATATTG > NC_000913/3888382‑3888480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |