| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 58 [0] | [0] 62 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 57 (1.130) | 44/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549664‑4549761 | tggtatttccggttcgataatgcttgtaccaacagggagggaatacgag > 1:3859028‑M2/49‑49 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:3743738‑M2/3‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:1655026‑M2/3‑1 (MQ=255) gtatttccggttcgataatgcttgtaccaacagggagggaatacgaGaa < 1:1738768‑M2/3‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:1029218‑M2/5‑1 (MQ=255) tatttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt < 1:2062159‑M2/5‑1 (MQ=255) atttccggttcgataatgcttgtaccaacagggagggaatacgaGAAAt > 1:1332201‑M2/45‑49 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATca < 1:1801235‑M2/7‑1 (MQ=255) tttccggttcgataatgcttgtaccaacagggagggaatacgaGAAATc < 1:2415172‑M2/6‑1 (MQ=255) tccggttcgataatgcttgtaccaacagggagggaatacgaGAAATcac < 1:2932625‑M2/8‑1 (MQ=255) ccggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAg > 1:1933280‑M2/41‑50 (MQ=255) ggttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa < 1:1924597‑M2/12‑1 (MQ=255) gttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGa > 1:2139983‑M2/38‑49 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:2688768‑M2/14‑1 (MQ=255) ttcgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACa < 1:2705298‑M2/14‑1 (MQ=255) cgataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt > 1:3157050‑M2/35‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:778143‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACAtt < 1:1811241‑M2/16‑1 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg > 1:195719‑M2/34‑50 (MQ=255) gataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTg < 1:3799918‑M2/17‑1 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:2976843‑M2/33‑50 (MQ=255) ataatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:2067483‑M2/33‑50 (MQ=255) taatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGc > 1:2197608‑M2/32‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:1866027‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:3053097‑M2/31‑49 (MQ=255) aatgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCt > 1:2009647‑M2/31‑49 (MQ=255) atgcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTa < 1:1613541‑M2/20‑1 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGTACATTGCTAATg > 1:2747347‑M2/28‑50 (MQ=255) gcttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg > 1:18113‑M2/28‑50 (MQ=255) cttgtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATg < 1:2483464‑M2/23‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCt < 1:196168‑M2/25‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:539625‑M2/26‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTg < 1:649927‑M2/26‑1 (MQ=255) gtaccaacagggagggaatacgaGAAATAACAGGACATTGCTAATGCTg < 1:2038305‑M2/26‑1 (MQ=255) taccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTgg < 1:2339375‑M2/27‑1 (MQ=255) ccaacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTAc < 1:306548‑M2/30‑1 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg < 1:2930467‑M2/31‑1 (MQ=255) caacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:3421538‑M2/20‑50 (MQ=255) aacagggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACg > 1:1222797‑M2/19‑49 (MQ=255) gggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAata < 1:3815715‑M2/36‑1 (MQ=255) ggagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:858306‑M2/14‑50 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAatat > 1:2688958‑M2/13‑49 (MQ=255) gagggaatacgaGAAATCACAGGACATTGCTAATGCTAGTACGCAATAtt < 1:3654882‑M2/38‑1 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa > 1:311350‑M2/12‑50 (MQ=255) agggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTa < 1:3721467‑M2/39‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc < 1:2891115‑M2/40‑1 (MQ=255) gggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAc > 1:1521675‑M2/11‑50 (MQ=255) ggaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAcc > 1:957653‑M2/10‑50 (MQ=255) gaatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCt > 1:1793986‑M2/9‑50 (MQ=255) aatacgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTg < 1:1828504‑M2/43‑1 (MQ=255) acgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg > 1:366212‑M2/5‑50 (MQ=255) acgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg > 1:1990150‑M2/5‑50 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAg < 1:3951899‑M2/46‑1 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:2719477‑M2/4‑50 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc > 1:64438‑M2/4‑50 (MQ=255) cgaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGc < 1:197459‑M2/47‑1 (MQ=255) gaGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt < 1:3832268‑M2/48‑1 (MQ=255) aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCt > 1:3206776‑M2/2‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:3476139/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTaa < 1:1574245/50‑1 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:1416413/1‑49 (MQ=255) gAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTa > 1:1017991/1‑49 (MQ=255) | CAGGGAATGTGCAATCGATTATTGGCGTGACTTTTGTTTATCAATAAAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTAA > NC_000913/4549664‑4549761 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |