| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,560,033 | C→T | A299A (GCG→GCA) | ddpB ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,560,033 | 0 | C | T | 92.9% | 143.4 / 1.9 | 42 | A299A (GCG→GCA) | ddpB | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| Reads supporting (aligned to +/- strand): ref base C (3/0); new base T (13/26); total (16/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.88e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
AGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAA > NC_000913/1559985‑1560079 | aGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAgc < 1:2253124/49‑1 (MQ=255) cAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGcc > 1:1614195/1‑50 (MQ=255) aaTGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTg < 1:3667075/50‑1 (MQ=255) aTGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGt < 1:3212765/50‑1 (MQ=255) aTGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGt < 1:1044069/50‑1 (MQ=255) tGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTa > 1:3312627/1‑50 (MQ=255) tGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTa > 1:657341/1‑50 (MQ=255) gAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTAt > 1:919103/1‑50 (MQ=255) aaaCCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTAtt < 1:107774/50‑1 (MQ=255) aaaCCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTAt < 1:1416552/49‑1 (MQ=255) aaCCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTAtt > 1:1485015/1‑49 (MQ=255) aCCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGa < 1:1637870/50‑1 (MQ=255) cACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATg > 1:3056313/1‑50 (MQ=255) cACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATg > 1:1553618/1‑50 (MQ=255) cgacgGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGtt < 1:3833121/50‑1 (MQ=255) gacgGCAAAGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTta < 1:836496/50‑1 (MQ=255) aGCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCAt < 1:2510981/50‑1 (MQ=255) gCCCATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCAtc < 1:276657/50‑2 (MQ=255) cccATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGc < 1:2614594/50‑1 (MQ=255) cATCACTGCCGGGAAGTCGAGTGCCTGTATTGATGCTACTACCCATGCAc > 1:1365260/1‑50 (MQ=255) aTCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCAcc < 1:2266823/50‑1 (MQ=255) tCACTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCAccc < 1:2386607/50‑1 (MQ=255) aCTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCa < 1:2944804/49‑1 (MQ=255) cTGCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCAtt < 1:888842/50‑1 (MQ=255) gCCGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTcc > 1:474944/1‑50 (MQ=255) ccGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTcc < 1:1780349/49‑1 (MQ=255) ccGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTc < 1:3062783/48‑1 (MQ=255) ccGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCg < 1:3703418/50‑1 (MQ=255) ccGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCg < 1:2962088/50‑1 (MQ=255) ccGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCg > 1:580345/1‑50 (MQ=255) cGGGAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCgg > 1:3076105/1‑50 (MQ=255) gAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGcc < 1:486301/50‑1 (MQ=255) gAAGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGc > 1:2388092/1‑49 (MQ=255) aaGTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCa < 1:3957805/50‑1 (MQ=255) gTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAgg < 1:360356/50‑1 (MQ=255) gTCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAgg < 1:2484399/50‑1 (MQ=255) tCGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGc < 1:316457/50‑1 (MQ=255) cGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGc > 1:1718711/1‑49 (MQ=255) cGAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGc > 1:1078899/1‑49 (MQ=255) cGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGc > 1:998700/1‑49 (MQ=255) gAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCaa < 1:833821/50‑1 (MQ=255) gAGTGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCa < 1:2981289/49‑1 (MQ=255) aGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCaa > 1:1230665/1‑49 (MQ=255) | AGCAAATGAAACCACGACGGCAAAGCCCATCACTGCCGGGAAGTCGAGCGCCTGTATTGATGTTACTACCCATGCACCCATTCCGGGCCAGGCAA > NC_000913/1559985‑1560079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |