| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,405,556 | T→C | intergenic (‑484/+147) | nuoA ← / ← lrhA | NADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,405,556 | 0 | T | C | 81.1% | 87.9 / 16.6 | 37 | intergenic (‑484/+147) | nuoA/lrhA | NADH:quinone oxidoreductase subunit A/DNA‑binding transcriptional dual regulator LrhA |
| Reads supporting (aligned to +/- strand): ref base T (3/4); new base C (16/14); total (19/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.93e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.76e-01 | |||||||||||
AGCAGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGC > NC_000913/2405509‑2405602 | aGCAGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAAtct > 1:3015089/1‑50 (MQ=255)aGCAGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAAcct > 1:1733549/1‑50 (MQ=255) gCAGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAAcct < 1:3331674/49‑1 (MQ=255) aGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCtg > 1:3474211/1‑50 (MQ=255) ggTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCtgg < 1:2903983/50‑1 (MQ=255) aTTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTggtggt > 1:2372757/1‑50 (MQ=255) ttttttCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGtt > 1:3799923/1‑49 (MQ=255) tttttCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTg < 1:1192169/49‑1 (MQ=255) ttttCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGa > 1:3496102/1‑49 (MQ=255) ttCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGaaa < 1:2847065/49‑1 (MQ=255) tCAGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGaaaa < 1:1687606/49‑1 (MQ=255) aGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAAt < 1:1357255/49‑1 (MQ=255) aGGCGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATg < 1:476458/50‑1 (MQ=255) cGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAAc < 1:3623514/50‑1 (MQ=255) cGATTATTTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAAc < 1:1283577/50‑1 (MQ=255) gATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGaa > 1:2829975/1‑48 (MQ=255) attattTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAg < 1:366922/50‑1 (MQ=255) attTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGtt < 1:243077/49‑1 (MQ=255) attTGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGtt < 1:385939/49‑1 (MQ=255) tttGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGttt < 1:2143762/49‑1 (MQ=255) ttGTGCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTg > 1:1394028/1‑50 (MQ=255) gtgCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTa > 1:2592215/1‑50 (MQ=255) gtgCGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTa > 1:2410186/1‑50 (MQ=255) cGTTCGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACg < 1:3296463/49‑1 (MQ=255) gTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGtt < 1:1136147/50‑1 (MQ=255) tCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCt > 1:2894402/1‑50 (MQ=255) cGGGACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTg > 1:640655/1‑50 (MQ=255) gggACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTg > 1:2105063/1‑49 (MQ=255) gggACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGc < 1:446092/50‑1 (MQ=255) gggACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGc < 1:540616/50‑1 (MQ=255) ggACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCa > 1:899442/1‑50 (MQ=255) gACGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCAc > 1:1318451/1‑50 (MQ=255) aCGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCAc > 1:2917859/1‑49 (MQ=255) aCGTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCAc > 1:1081016/1‑49 (MQ=255) gcgAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTAt < 1:845245/48‑1 (MQ=38) gTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTAt > 1:25897/1‑50 (MQ=255) gTGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTAt > 1:2000324/1‑50 (MQ=255) tGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATg > 1:2824312/1‑50 (MQ=255) tGAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATg < 1:2279471/50‑1 (MQ=255) gAACCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGc > 1:1221574/1‑50 (MQ=255) | AGCAGGTGATTTTTTTCAGGCGATTATTTGTGCGTTCGGGACGTGAATCTCTGGTGGTTGAAAAATGAACAGTTTTGTACGTTCTGCACTATGC > NC_000913/2405509‑2405602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |