mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,943,125 | 0 | G | A | 74.1% | 103.0 / 39.2 | 54 | G155D (GGC→GAC) | znuC | Zn(2(+)) ABC transporter ATP binding subunit |
| * | NC_000913 | 2,151,420 | 0 | C | T | 69.6% | 69.7 / 40.7 | 46 | T79M (ACG→ATG) | yegJ | DUF2314 domain‑containing protein YegJ |
| * | NC_000913 | 3,815,801 | 0 | A | . | 64.7% | 19.4 / 107.2 | 51 | intergenic (‑33/+62) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| * | NC_000913 | 3,423,287 | 0 | G | C | 53.3% | 13.0 / 19.6 | 15 | intergenic (+93/+136) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA |
| * | NC_000913 | 4,168,247 | 0 | A | G | 39.0% | 81.3 / 128.1 | 100 | intergenic (+47/‑125) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,093,134 | 0 | T | G | 34.8% | 80.5 / 15.9 | 48 | Y102S (TAC→TCC) | rhaM | L‑rhamnose mutarotase |
| * | NC_000913 | 1,776,250 | 0 | G | T | 31.7% | 75.9 / 10.4 | 41 | V222L (GTG→TTG) | ydiF | putative acetate‑CoA transferase |
| * | NC_000913 | 4,457,105 | 0 | A | G | 31.1% | 89.4 / 11.5 | 45 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.7% | 151.4 / 97.2 | 101 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,206,435 | 0 | C | T | 29.5% | 96.3 / 13.0 | 44 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,151,581 | 0 | G | T | 29.3% | 98.9 / 15.6 | 42 | D133Y (GAT→TAT) | yegJ | DUF2314 domain‑containing protein YegJ |
| * | NC_000913 | 3,375,120 | 0 | C | G | 27.0% | 84.4 / 12.4 | 37 | G84G (GGC→GGG) | dcuD | putative transporter DcuD |
| * | NC_000913 | 624,589 | 0 | T | C | 26.3% | 111.6 / 42.3 | 57 | intergenic (‑79/‑296) | fepB/entC | ferric enterobactin ABC transporter periplasmic binding protein/isochorismate synthase EntC |
| * | NC_000913 | 29,496 | 0 | T | A | 25.0% | 97.2 / 15.2 | 40 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 2,185,199 | 0 | T | G | 25.0% | 164.4 / 12.8 | 60 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 2,958,771 | 0 | A | T | 25.0% | 88.3 / 12.5 | 36 | D38E (GAT→GAA) | ptrA | protease 3 |
| * | NC_000913 | 3,401,459 | 0 | T | C | 24.5% | 127.3 / 10.2 | 53 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 2,792,979 | 0 | C | T | 24.5% | 103.1 / 14.3 | 49 | A82V (GCT→GTT) | gabT | 4‑aminobutyrate aminotransferase GabT |
| * | NC_000913 | 3,947,829 | 0 | G | A | 24.3% | 86.0 / 10.6 | 37 | L47F (CTT→TTT) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 4,223,597 | 0 | C | T | 22.2% | 109.2 / 10.7 | 45 | R11K (AGA→AAA) | iclR | DNA‑binding transcriptional repressor IclR |