| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 51 [0] | [0] 50 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 49 (0.850) | 34/98 | 0.1 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:736042/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:613740/50‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:3557497/49‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC > 1:2961446/1‑50 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:788970/50‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC > 1:2268164/1‑50 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:723057/50‑1 GAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCG > 1:419277/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:403074/50‑1 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:4413039/50‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT > 1:444829/1‑49 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT > 1:1374172/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:2963653/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:136755/1‑49 CCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:502632/50‑1 CCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:1224295/50‑1 CCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:2699274/50‑1 CGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAAC < 1:3966502/50‑1 GCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACA < 1:231226/50‑1 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:1209140/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:3782550/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:338612/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:602863/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:1477124/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:3219675/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:3290646/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:1904087/50‑1 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:549276/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG > 1:996417/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:1112500/1‑49 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA > 1:1461019/1‑49 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:3631600/49‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:4211542/49‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:78364/49‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:1972429/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:4443975/1‑50 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:3604068/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT > 1:117605/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:1894054/50‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATACCATGAAACTGGGTATGTT < 1:3595514/50‑1 CCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT < 1:224483/49‑1 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC < 1:999900/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT < 1:3648634/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT < 1:1500271/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:1184500/1‑50 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:3615039/1‑50 GCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC > 1:2932012/1‑50 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:1021636/1‑50 TGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT < 1:4249101/50‑1 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCT > NC_000913/1140988‑1141035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |