| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,997,112 | Δ26,567 bp | [tcyN]–[fliR] | 32 genes [tcyN], tcyL, dcyD, tcyJ, fliZ, fliA, fliC, fliD, fliS, fliT, amyA, yedD, yedE, yedF, yedK, yedL, yedN, intG, fliE, fliF, fliG, fliH, fliI, fliJ, fliK, fliL, fliM, fliN, fliO, fliP, fliQ, [fliR] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1997112 | 2023678 | 26567 | 59 [0] | [0] 58 | [tcyN]–[fliR] | [tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,[fliR] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1997111 | 0 (0.000) | 58 (1.000) | 41/98 | 0.0 | 100% | coding (704/753 nt) | tcyN | cystine ABC transporter ATP binding subunit |
| ? | NC_000913 | 2023679 = | 0 (0.000) | intergenic (+1/‑289) | fliR/rcsA | flagellar biosynthesis protein FliR/DNA‑binding transcriptional activator RcsA | |||||
TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:4309850/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:439962/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGT > 1:2651211/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGT > 1:3766386/1‑50TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGT > 1:2321363/1‑50 ATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTT > 1:2346589/1‑50 TTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTC < 1:1187245/50‑1 TGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGTTCC > 1:1477516/1‑50 GCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCC < 1:1925715/49‑1 CAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCG > 1:2066248/1‑49 CAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGGTCCG > 1:2407249/1‑49 AGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACG > 1:2842541/1‑50 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:1207046/50‑1 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:325689/50‑1 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTT < 1:4118680/50‑1 AACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCCTAACGTTT > 1:2922669/1‑50 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTA > 1:2005596/1‑50 ACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGTCCGTAACGGTTA > 1:180656/1‑50 TCTCGAGGAACTGGCGGGGGCGAGGCTGCTCGGGTCCGTAACGTTTATCA > 1:1176008/1‑50 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:387198/48‑1 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:3964559/48‑1 CTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATC < 1:1971913/48‑1 CGAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT > 1:100035/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTT > 1:598095/1‑50 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGT < 1:2197122/49‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATG < 1:4051648/48‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:3365752/47‑1 GAGGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCAT < 1:3314648/47‑1 GGAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTAT < 1:2898171/50‑1 GAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC < 1:389733/50‑1 GAACTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATC < 1:2801558/50‑1 CTGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTA < 1:2725928/50‑1 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:964322/1‑48 TGGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCT > 1:4269154/1‑48 GGCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG > 1:2384368/1‑50 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGG < 1:3954960/50‑1 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG < 1:194508/49‑1 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAG > 1:492612/1‑49 GCGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAA < 1:1926236/48‑1 CGGGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGA > 1:2744425/1‑50 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:384228/50‑1 GGTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATT < 1:1610543/50‑1 GTGCGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTA > 1:4103220/1‑50 CGAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC < 1:2786709/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG < 1:394786/50‑1 GAGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCC > 1:3519110/1‑49 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:2687389/1‑49 AGGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCG > 1:3141899/1‑49 GGCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA < 1:4062638/50‑1 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAA < 1:858/50‑1 GCTGCTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAA > 1:3879483/1‑49 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAAT < 1:1147375/49‑1 CTCGGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAA < 1:2189541/48‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > 1:1867774/1‑50 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA < 1:3399801/50‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:1795404/49‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:3872592/49‑1 GGTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAAT < 1:3836612/49‑1 TATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1997063‑1997111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATA > NC_000913/2023679‑2023726 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |