Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,756,160 Δ35,091 bp [intA]–[lhgO] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2756160 2791250 35091 33 [0] [0] 32 [intA]–[lhgO] [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 27561590 (0.000)31 (0.550) 24/96 0.7 100% coding (1/1242 nt) intA CP4‑57 prophage; integrase
?NC_000913 2791251 = 0 (0.000)intergenic (+1/‑22) lhgO/gabD L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase

AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756109‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299
                                                                                                    
AACGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCA                                                   >  1:4277952/1‑50
   GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                <  1:4077491/50‑1
    AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT                                               <  1:1612278/50‑1
    AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT                                               <  1:4226521/50‑1
     AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:60669/50‑1
     AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              >  1:2021520/1‑50
      AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG                                             <  1:4130426/50‑1
      AAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTG                                             <  1:1819327/50‑1
        GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:3052927/50‑1
            TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA                                         <  1:217015/48‑1
             ATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      >  1:2721077/1‑50
              TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA                                       <  1:118849/48‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:1873760/49‑1
                    ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:2146285/49‑1
                     CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC                              >  1:2141207/1‑50
                      GTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCG                             <  1:2788823/50‑1
                           ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATG                          <  1:908837/47‑1
                            gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:1352914/49‑1
                                AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC                      <  1:509111/48‑1
                                 ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:1232488/50‑1
                                  CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA                  <  1:277859/50‑1
                                   GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC                 <  1:4169562/50‑1
                                   GCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAAC                 <  1:911414/50‑1
                                    CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG                <  1:4185921/50‑1
                                      GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC              <  1:1355491/50‑1
                                       GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA             <  1:3070504/50‑1
                                       GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA             <  1:4201833/50‑1
                                        GAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG            <  1:1333717/50‑1
                                               CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA     >  1:3474808/1‑50
                                               CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA     <  1:2111266/50‑1
                                                CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT    <  1:3389749/50‑1
                                                 CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT   <  1:824119/50‑1
                                                  ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  <  1:162637/50‑1
                                                                                                    
AACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756109‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.