| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 66 [0] | [0] 65 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 65 (1.120) | 50/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAA < 1:4445218/50‑1CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:581369/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA < 1:348384/50‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:744495/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:3866028/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:59333/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:3196764/1‑50 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:3082330/1‑50 CACATTACATTCACTGTATTTATAACCACATCAATGAATACTAACAATGC < 1:481274/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:2337744/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:2332779/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:4443862/50‑1 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:2572235/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:471902/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1575096/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:1008165/1‑50 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:2399156/1‑49 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:551564/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:1330509/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4364219/1‑50 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:1019682/1‑49 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:4107911/1‑50 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3761783/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:2488366/1‑49 TCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:4185045/1‑50 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG < 1:1574236/49‑1 CACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAG > 1:76100/1‑49 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:536702/1‑50 CTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC < 1:3608312/50‑1 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:1712245/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:2390873/48‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCA < 1:3622931/50‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:1406446/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:4282995/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:2745339/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:3999587/1‑49 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:371403/49‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:1345576/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:929671/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:4317142/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:1594343/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:2464843/49‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:2465007/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:912200/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3447410/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:2238113/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:4335995/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1506254/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:1903968/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:1719002/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA < 1:592743/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:752251/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:1171467/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:541263/1‑50 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:2129248/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACG < 1:2091760/49‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:2290706/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:3226208/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT > 1:1330789/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:324771/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:915915/1‑50 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC > 1:1693029/1‑50 ACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG > 1:1822194/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:484050/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCG < 1:1217026/49‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362115‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |