| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 54 [0] | [0] 54 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 50 (0.920) | 37/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453879‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:752050/1‑49 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:1262953/1‑50 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:1456114/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:2706433/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:1725836/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:4040923/1‑50 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATA < 1:3719660/49‑1 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT > 1:344242/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:451701/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:663918/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC < 1:3927419/49‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:1577300/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:3166282/49‑1 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:1930106/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA < 1:1314733/49‑1 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTG < 1:3508339/48‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:3538890/1‑50 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:3704301/49‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:1002225/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA < 1:694450/50‑1 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA > 1:4270325/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:1875945/48‑1 GCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACT < 1:1703216/50‑1 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG < 1:827381/50‑1 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:3382123/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:202573/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:3742676/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:4290687/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:408129/1‑50 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:2483667/1‑50 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACA < 1:3951322/50‑1 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:1479480/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1199216/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:4089327/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 1:3850224/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 1:277881/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAA < 1:2702208/49‑1 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:2846727/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGT > 1:3474804/1‑50 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:1771665/50‑1 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:177886/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:548486/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:1324583/49‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:57935/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG < 1:2606141/50‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3082147/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:4341909/1‑50 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:2129822/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:478240/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:4396897/1‑49 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:2599110/1‑49 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:2756485/50‑1 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:269029/1‑49 TTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA < 1:2949794/50‑1 GGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453879‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |