| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 85 [0] | [0] 84 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 82 (1.440) | 50/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761943‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:349483/50‑1 CGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA < 1:885302/50‑1 CGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCA < 1:3995870/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:967685/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:3323771/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:2906569/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:2164814/50‑1 GTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATG < 1:1537915/50‑1 TCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGAT < 1:309738/49‑1 CATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATC > 1:3483228/1‑49 CATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATC < 1:473998/49‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCC < 1:613713/49‑1 ATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCC > 1:1910838/1‑49 GCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA > 1:850836/1‑50 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT < 1:2683735/50‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAAT < 1:1813845/50‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA < 1:4171623/49‑1 CCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAA < 1:3380955/49‑1 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:1274008/50‑1 CGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA < 1:4097813/50‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAA < 1:1326821/50‑1 GAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATA > 1:548046/1‑49 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAG < 1:84525/50‑1 GTCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAG < 1:4152920/50‑1 TCCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA < 1:3590762/50‑1 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:740491/1‑49 CCTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGA > 1:1698966/1‑49 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATA < 1:1862996/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATA < 1:480314/50‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:2680738/49‑1 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT > 1:1585874/1‑49 CTTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGAT < 1:3445607/49‑1 TTTGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAA > 1:4342351/1‑50 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:1528667/49‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAAT < 1:3834444/49‑1 TGTGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAA < 1:4090090/48‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA > 1:883430/1‑50 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCA < 1:2105658/50‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:571303/49‑1 TGCGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGC < 1:3473800/49‑1 TGCGAGGAAAAATATCAGTATGGCTAAATGATCCAAATAAAGATAATGC < 1:3459423/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGCTCCAAATAAAGATAATGCATC > 1:496437/1‑50 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC < 1:183798/50‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:3475563/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:1389492/49‑1 CGAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCAT < 1:241464/49‑1 GAGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATC > 1:12578/1‑49 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:3506794/50‑1 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:2215684/50‑1 AGGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCA < 1:2331076/50‑1 GGAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAG < 1:415113/50‑1 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:3553538/1‑50 GAAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGC > 1:1865138/1‑50 AAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCT > 1:1133982/1‑50 AAAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCT > 1:390423/1‑50 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > 1:339864/1‑50 AAAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTG > 1:1437465/1‑50 AAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:2654367/1‑50 AAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:709978/1‑50 AAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:1787661/1‑50 AAATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGG > 1:3472198/1‑50 AATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT < 1:3597661/50‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTC < 1:554547/50‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTC < 1:2003357/50‑1 ATATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGT > 1:2928396/1‑49 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT > 1:112829/1‑50 ATCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT > 1:2840938/1‑50 TCAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAT < 1:1585576/49‑1 CAGTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTC > 1:442061/1‑50 GTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTT < 1:1754182/50‑1 GTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:44273/1‑49 GTATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:3667226/1‑49 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTA < 1:3931095/50‑1 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:3786920/1‑48 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:1233448/1‑48 TATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCT > 1:4213222/1‑48 ATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:3986227/1‑50 ATGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:2181999/1‑50 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG < 1:788785/49‑1 TGGCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAG > 1:4298398/1‑49 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:846977/1‑50 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:2179819/1‑50 GCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG < 1:4402879/50‑1 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:4039732/1‑49 CTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > 1:767716/1‑49 CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3761943‑3761992‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAG > NC_000913/3770243‑3770290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |