| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,286,401 | Δ3,780 bp | [yejO]–[yejO] | [yejO], insH‑8, [yejO] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2286401 | 2290180 | 3780 | 80 [0] | [0] 80 | [yejO]–[yejO] | [yejO],insH‑8,[yejO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2286400 | 0 (0.000) | 80 (1.380) | 52/98 | 0.0 | 100% | pseudogene (2515/2525 nt) | yejO | adhesin‑like autotransporter YejO |
| ? | NC_000913 | 2290181 = | 0 (0.000) | intergenic (‑1/‑319) | yejO/narP | adhesin‑like autotransporter YejO/DNA‑binding transcriptional dual regulator NarP | |||||
CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCA > NC_000913/2286352‑2286447 | cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:728804‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:4060171‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:4031978‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:38564‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:330841‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:1646273‑M1/50‑2 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:2921906‑M1/1‑49 (MQ=255)cAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt < 1:2842432‑M1/50‑2 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:938947‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:3509557‑M1/1‑48 (MQ=255) aGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCt > 1:3034427‑M1/1‑48 (MQ=255) gACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtga < 1:3557540‑M1/50‑4 (MQ=255) aCCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgag < 1:3081225‑M1/50‑5 (MQ=255) cGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagct > 1:1031256‑M1/1‑44 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:3983292‑M1/1‑43 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:1851362‑M1/1‑43 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:4113246‑M1/50‑8 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt > 1:4162236‑M1/1‑43 (MQ=255) gTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctt < 1:3710152‑M1/50‑8 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:3116205‑M1/1‑41 (MQ=255) gACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagcttt > 1:3829496‑M1/1‑41 (MQ=255) acacATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttc < 1:411954‑M1/49‑10 (MQ=255) caTCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcc > 1:757707‑M1/1‑37 (MQ=255) cacaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:1919179‑M1/1‑34 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat > 1:3849937‑M1/1‑33 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:1503124‑M1/49‑17 (MQ=255) acaGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctat < 1:2074231‑M1/49‑17 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:2809090‑M1/50‑19 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:100594‑M1/50‑19 (MQ=255) caGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga < 1:3279668‑M1/50‑19 (MQ=255) aGCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatga > 1:1427137‑M1/1‑31 (MQ=255) gCCTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaa < 1:2023870‑M1/50‑21 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:3830915‑M1/1‑29 (MQ=255) ccTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat < 1:3484946‑M1/50‑22 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:1851833‑M1/1‑28 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:1455996‑M1/1‑28 (MQ=255) cTGTTTATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaat > 1:896753‑M1/1‑28 (MQ=255) tttATTTTCTGTTATCAGAACGTCCtgagctttcatgctatgaaatta < 1:1664256‑M1/48‑24 (MQ=255) ttATTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaatt > 1:3074757‑M1/1‑24 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc > 1:3873103‑M1/1‑22 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc > 1:698607‑M1/1‑22 (MQ=255) aTTTTCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattg < 1:3946550‑M1/49‑28 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgct < 1:4355802‑M1/50‑30 (MQ=255) ttttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgc < 1:1623266‑M1/49‑29 (MQ=255) tttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg > 1:2300042‑M1/1‑20 (MQ=255) ttCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctg < 1:1059375‑M1/49‑31 (MQ=255) tCTGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgt < 1:4395695‑M1/49‑32 (MQ=255) tGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta > 1:3464484‑M1/1‑16 (MQ=255) tGTTATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta > 1:4241579‑M1/1‑16 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaa < 1:658977‑M1/50‑37 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa < 1:770886‑M1/48‑35 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaa < 1:4237531‑M1/48‑35 (MQ=255) ttATCAGAACGTCCtgagctttcatcctatgaaattaattgctgtta < 1:630663‑M1/47‑34 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:4014539‑M1/1‑13 (MQ=255) tATCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag > 1:2375840‑M1/1‑13 (MQ=255) aTCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaag < 1:4389274‑M1/49‑38 (MQ=255) tCAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagc < 1:1806071‑M1/49‑39 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:1576537‑M1/1‑10 (MQ=255) cAGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat > 1:2070844‑M1/1‑10 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:2503451‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt < 1:2040936‑M1/50‑42 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:1625854‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcatt > 1:1105163‑M1/1‑9 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat < 1:893967‑M1/49‑41 (MQ=255) aGAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcat < 1:836553‑M1/49‑41 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg > 1:3563266‑M1/1‑8 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg < 1:3308699‑M1/50‑43 (MQ=255) gAACGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattg < 1:392120‑M1/50‑43 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg < 1:173307‑M1/50‑44 (MQ=255) aaCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgg > 1:1692551‑M1/1‑7 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:643036‑M1/1‑6 (MQ=255) aCGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg < 1:3180853‑M1/50‑45 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggt < 1:3514874‑M1/50‑46 (MQ=255) cGTCCtgagctttcatcctatgaaattaattgctgttaaaagcattggg > 1:3733336‑M1/1‑5 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:3385551‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:1824883‑M1/1‑4 (MQ=255) gTCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:1395835‑M1/1‑4 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggtac < 1:94539‑M1/50‑48 (MQ=255) tCCtgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:1666442‑M1/1‑3 (MQ=255) ctgagctttcatcctatgaaattaattgctgttaaaagcattgggta > 1:331175‑M1/1‑1 (MQ=255) | CAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCA > NC_000913/2286352‑2286447 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |