| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,651,293 | Δ2,422 bp | [yhiS]–yhiS | [yhiS], insH‑11, yhiS | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3651293 | 3653714 | 2422 | 77 [0] | [0] 76 | [yhiS]–yhiS | [yhiS],insH‑11,yhiS |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3651292 | 0 (0.000) | 69 (1.240) | 50/94 | 0.0 | 100% | pseudogene (2/746 nt) | yhiS | putative uncharacterized protein YhiS |
| ? | NC_000913 | 3653715 = | 0 (0.000) | intergenic (+2/‑246) | yhiS/slp | putative uncharacterized protein YhiS/starvation lipoprotein | |||||
TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 | tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:2239713‑M1/50‑1 (MQ=255)tCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTAT < 1:1893223‑M1/50‑1 (MQ=255) ccAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa > 1:3695419‑M1/1‑49 (MQ=255) cAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATa < 1:3518321‑M1/49‑2 (MQ=255) aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt < 1:2592462‑M1/50‑4 (MQ=255) aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:670236‑M1/1‑47 (MQ=255) aaTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:2348981‑M1/1‑47 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg < 1:2242510‑M1/50‑5 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattg < 1:3746158‑M1/50‑5 (MQ=255) aTTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATatt > 1:3498541‑M1/1‑46 (MQ=255) tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga < 1:298642‑M1/50‑6 (MQ=255) tttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattga > 1:4303566‑M1/1‑45 (MQ=255) ttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:530134‑M1/1‑44 (MQ=255) ttAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:2691599‑M1/1‑44 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:1421447‑M1/1‑43 (MQ=255) tAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgat > 1:1389570‑M1/1‑43 (MQ=255) aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta > 1:2989661‑M1/1‑42 (MQ=255) aaaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatt < 1:3578661‑M1/49‑8 (MQ=255) aaCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgatta < 1:1529299‑M1/49‑9 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 1:1256746‑M1/1‑40 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 1:3165287‑M1/1‑40 (MQ=255) aCATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattat > 1:417814‑M1/1‑40 (MQ=255) cATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattatta < 1:1221824‑M1/50‑12 (MQ=255) aTCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag < 1:1439644‑M1/50‑13 (MQ=255) tCTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattag > 1:35022‑M1/1‑37 (MQ=255) cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca > 1:2715222‑M1/1‑36 (MQ=255) cTTAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagca > 1:2593155‑M1/1‑36 (MQ=255) ttAGCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcac > 1:2038406‑M1/1‑35 (MQ=255) gCATAAAACAAATGATGAATAAGGAATTTTATattgattattagcacttt < 1:433825‑M1/50‑19 (MQ=255) tAAAACAAATGATGAATAAGGAATTTTATattgattattagcactttata < 1:3335793‑M1/50‑22 (MQ=255) aaCAAATGATGAATAAGGAATTTTATattgattattagcactttataatc < 1:3544365‑M1/50‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca > 1:1030229‑M1/1‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:2856973‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca > 1:3473820‑M1/1‑25 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:3652371‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:680848‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:2685719‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca < 1:1704776‑M1/50‑26 (MQ=255) aCAAATGATGAATAAGGAATTTTATattgattattagcactttataatca > 1:2433725‑M1/1‑25 (MQ=255) cAAATGATGAATAAGGAATTTTATattgattattagcactttataatcat < 1:2767083‑M1/50‑27 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt < 1:1954527‑M1/50‑28 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:2100304‑M1/1‑23 (MQ=255) aaaTGATGAATAAGGAATTTTATattgattattagcactttataatcatt > 1:2169241‑M1/1‑23 (MQ=255) atgattAATAAGGAATTTTATattgattattagcactttataatcattg > 1:1020173‑M1/1‑21 (MQ=255) atgatgAATAAGGAATTTTATattgattattagcactttataatcattga < 1:3701679‑M1/50‑30 (MQ=255) gatgaATAAGGAATTTTATattgattattagcactttataatcattgaa > 1:1681787‑M1/1‑19 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaat > 1:3991082‑M1/1‑18 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaat < 1:449952‑M1/49‑32 (MQ=255) atgaATAAGGAATTTTATattgattattagcactttataatcattgaat < 1:623165‑M1/49‑32 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:4155355‑M1/50‑34 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:1848416‑M1/50‑34 (MQ=255) tgaATAAGGAATTTTATattgattattagcactttataatcattgaataa < 1:2111202‑M1/50‑34 (MQ=255) gaATAAGGAATTTTATattgattattagcactttataatcattgaataa > 1:912839‑M1/1‑16 (MQ=255) aaTAAGGAATTTTATattgattattagcactttataatcattgaataaa < 1:1337385‑M1/49‑35 (MQ=255) aaTAAGGAATTTTATattgattattagcactttataatcattgaataaa > 1:3260283‑M1/1‑15 (MQ=255) aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:3537313‑M1/1‑14 (MQ=255) aTAAGGAATTTTATattgattattagcactttataatcattgaataaaaa < 1:3188434‑M1/50‑37 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat < 1:3535137‑M1/50‑38 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaat < 1:3151397‑M1/50‑38 (MQ=255) tAAGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:3772196‑M1/1‑13 (MQ=255) aaGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:1926436‑M1/1‑12 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaatag < 1:2993226‑M1/50‑40 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaata < 1:2428693‑M1/49‑39 (MQ=255) aGGAATTTTATattgattattagcactttataatcattgaataaaaa > 1:3103622‑M1/1‑11 (MQ=255) aaTTTTATattgattattagcactttataatcattgaataaaaatagatt > 1:3244020‑M1/1‑8 (MQ=255) aTTTTATattgattattagcactttataatcattgaataaaaatagattt < 1:659836‑M1/50‑44 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagatttt < 1:3481917‑M1/50‑45 (MQ=255) ttttATattgattattagcactttataatcattgaataaaaatagatttt < 1:455721‑M1/50‑45 (MQ=255) ttATattgattattagcactttataatcattgaataaaaatagattttat > 1:2683267‑M1/1‑4 (MQ=255) ttATattgattattagcactttataatcattgaataaaaatagatttta < 1:543378‑M1/49‑46 (MQ=255) tatattgattattagcactttataatcattgaataaaaatagattttat < 1:4333302‑M1/49‑47 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg > 1:1217991‑M1/1‑2 (MQ=255) atattgattattagcactttataatcattgaataaaaatagattttatg < 1:3458898‑M1/49‑48 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta > 1:1146552‑M1/1‑1 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta > 1:1481517‑M1/1‑1 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:1131013‑M1/50‑50 (MQ=255) tattgattattagcactttataatcattgaataaaaatagattttatgta < 1:1923454‑M1/50‑50 (MQ=255) | TCCAATTTAAACATCTTAGCATAAAACAAATGATGAATAAGGAATTTTATGTCAATTGACTTTACCCCAGGTATAATAAATACATATCACGGCGATATT > NC_000913/3651243‑3651341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |