| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,962,566 | Δ16,764 bp | flhE–insA‑5 | 17 genes flhE, flhA, flhB, cheZ, cheY, cheB, cheR, tap, tar, cheW, cheA, motB, motA, flhC, flhD, insB‑5, insA‑5 |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1962566 | 1979329 | 16764 | 74 [0] | [0] 74 | flhE–insA‑5 | flhE,flhA,flhB,cheZ,cheY,cheB,cheR,tap,tar,cheW,cheA,motB,motA,flhC,flhD,insB‑5,insA‑5 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1962565 | 0 (0.000) | 73 (1.290) | 47/96 | 0.0 | 100% | intergenic (+105/+15) | yecT/flhE | protein YecT/flagellar protein |
| ? | NC_000913 | 1979330 = | 0 (0.000) | intergenic (‑115/‑423) | insA‑5/uspC | IS1 protein InsA/universal stress protein C | |||||
AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962517‑1962614 | aGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTc < 1:1297018‑M1/50‑2 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:89741‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:1990104‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:2655590‑M1/1‑45 (MQ=255) aTCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgcta > 1:2974084‑M1/1‑45 (MQ=255) tCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctac < 1:214888‑M1/50‑7 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgc > 1:3491913‑M1/1‑42 (MQ=255) gAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacg < 1:2183929‑M1/49‑8 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:299706‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:1795366‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:2443453‑M1/50‑10 (MQ=255) aGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgct < 1:57720‑M1/50‑10 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:365084‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2369718‑M1/50‑11 (MQ=255) gCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgcta < 1:2249528‑M1/50‑11 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag > 1:3815626‑M1/1‑35 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:1346225‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:1806190‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaa < 1:2384995‑M1/49‑15 (MQ=255) tttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagca < 1:1520669‑M1/48‑14 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag < 1:4107302‑M1/49‑16 (MQ=255) ttCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaag < 1:2660081‑M1/49‑16 (MQ=255) tCACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagc > 1:2350841‑M1/1‑33 (MQ=255) cACTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagca < 1:1072552‑M1/49‑18 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:2540152‑M1/49‑19 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa > 1:3282943‑M1/1‑31 (MQ=255) aCTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaa < 1:1741380‑M1/49‑19 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaa < 1:269587‑M1/50‑21 (MQ=255) cTGAGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaa > 1:598774‑M1/1‑30 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:1901132‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:1190422‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:852425‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatg < 1:1181689‑M1/50‑24 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat < 1:833934‑M1/49‑23 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:3534042‑M1/1‑27 (MQ=255) aGTTATTAAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaat > 1:3723268‑M1/1‑27 (MQ=255) gTTCTTAAACGTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga < 1:829283‑M1/50‑25 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:1829669‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaa < 1:2398564‑M1/50‑26 (MQ=255) ttattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatga > 1:728073‑M1/1‑25 (MQ=255) tattaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:2085470‑M1/1‑24 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa < 1:449176‑M1/49‑27 (MQ=255) attaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:2911963‑M1/1‑23 (MQ=255) ttaAACATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaa > 1:576498‑M1/1‑22 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:2003026‑M1/49‑30 (MQ=255) aaaCATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacag < 1:3710355‑M1/49‑30 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat < 1:929511‑M1/50‑34 (MQ=255) cATACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaa > 1:231448‑M1/1‑17 (MQ=255) aTACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaat > 1:810606‑M1/1‑16 (MQ=255) tACTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataa < 1:699684‑M1/50‑36 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:597914‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:1118876‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatc < 1:1896526‑M1/50‑38 (MQ=255) cTCGCGAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataat < 1:2257130‑M1/49‑37 (MQ=255) cgcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcg > 1:897555‑M1/1‑11 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:1964992‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaa < 1:2492677‑M1/50‑41 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:2701114‑M1/1‑10 (MQ=255) gcgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcga > 1:3841840‑M1/1‑10 (MQ=255) cgAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa < 1:4243240‑M1/50‑42 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1407066‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1712272‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:414398‑M1/1‑8 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat < 1:2645832‑M1/50‑43 (MQ=255) gAGCGCGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat > 1:1200744‑M1/1‑8 (MQ=255) gcgcGTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg < 1:4326172‑M1/50‑45 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:227848‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggg < 1:476104‑M1/50‑46 (MQ=255) cgcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg > 1:2712475‑M1/1‑5 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga > 1:1002051‑M1/1‑4 (MQ=255) gcgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga < 1:1337696‑M1/50‑47 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat < 1:1955910‑M1/50‑48 (MQ=255) cgTcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat > 1:328716‑M1/1‑3 (MQ=255) tcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgt < 1:2701281‑M1/50‑50 (MQ=255) | AGACATCGAGCCTTTTTCACTGAGTTATTAAACATACTCGCGAGCGCGTAATTTTTTTGTCCTTCAGCGATAATTCACAATCACTTCATTACGTTGTA > NC_000913/1962517‑1962614 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |