| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2558699 | 2565488 | 6790 | 51 [0] | [0] 53 | intZ–[eutA] | intZ,yffL,yffM,yffN,yffO,yffP,yffQ,yffR,yffS,[eutA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 0 (0.000) | 46 (0.950) | 37/82 | 0.0 | 100% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/CPZ‑55 prophage; putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 0 (0.000) | coding (1396/1404 nt) | eutA | reactivating factor for ethanolamine ammonia‑lyase EutBC | |||||
TTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558651‑2558747 | ttGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGg > 1:1146784‑M1/1‑48 (MQ=255) tGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGga > 1:223344‑M1/1‑47 (MQ=255) tGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGga > 1:2458501‑M1/1‑47 (MQ=255) gCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaa < 1:1382183‑M1/49‑4 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg < 1:2647251‑M1/50‑7 (MQ=255) cGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatg < 1:804709‑M1/50‑7 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:2709710‑M1/1‑43 (MQ=255) gAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:768885‑M1/1‑43 (MQ=255) aaCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:1159388‑M1/1‑42 (MQ=255) aCAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgc > 1:3117491‑M1/1‑41 (MQ=255) cAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgag > 1:4027930‑M1/1‑40 (MQ=255) aaTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:1332170‑M1/1‑39 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtg < 1:4444603‑M1/50‑13 (MQ=255) aTGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagt > 1:3461636‑M1/1‑38 (MQ=255) tgtgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtga > 1:2651331‑M1/1‑37 (MQ=255) tgGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatt > 1:3098200‑M1/1‑35 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:3277573‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttc < 1:1262165‑M1/50‑18 (MQ=255) gTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgattt < 1:3882087‑M1/49‑17 (MQ=255) cTTTAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcac > 1:1957370‑M1/1‑31 (MQ=255) tttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc > 1:615415‑M1/1‑30 (MQ=255) ttAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccg > 1:1799631‑M1/1‑29 (MQ=255) tAGTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcacc < 1:1422183‑M1/48‑21 (MQ=255) gTTTCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtca > 1:3571651‑M1/1‑26 (MQ=255) tttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcac > 1:216607‑M1/1‑25 (MQ=255) ttCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc > 1:3876107‑M1/1‑24 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg > 1:2644435‑M1/1‑23 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccg > 1:4065793‑M1/1‑23 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 1:3861336‑M1/49‑27 (MQ=255) tCATAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcacc < 1:1996803‑M1/49‑27 (MQ=255) aTAAGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccgg > 1:856219‑M1/1‑21 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcaca < 1:4048946‑M1/50‑33 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcaca < 1:406947‑M1/50‑33 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcac > 1:700129‑M1/1‑18 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcac < 1:2536559‑M1/49‑32 (MQ=255) aGTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcac > 1:420677‑M1/1‑18 (MQ=255) gTCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaa > 1:3878531‑M1/1‑17 (MQ=255) tCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaac < 1:2189360‑M1/50‑35 (MQ=255) tCGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaac < 1:4086045‑M1/50‑35 (MQ=255) cGTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:3081261‑M1/1‑15 (MQ=255) gTTCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaacc > 1:2580890‑M1/1‑14 (MQ=255) ttCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccga > 1:3857032‑M1/1‑13 (MQ=255) tCCCTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat > 1:2773489‑M1/1‑12 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatc > 1:2543967‑M1/1‑11 (MQ=255) cccTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgat < 1:1668039‑M1/49‑39 (MQ=255) cTCAGGAAGgaaatgcgagtgatttcaccgtcaccggcacaaccgatccg > 1:255961‑M1/1‑9 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgcc > 1:3295075‑M1/1‑6 (MQ=255) aggaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgc < 1:365890‑M1/48‑43 (MQ=255) gaaggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa < 1:3069684‑M1/50‑47 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaaaag < 1:2496366‑M1/50‑50 (MQ=255) ggaaatgcgagtgatttcaccgtcaccggcacaaccgatccgccaaa > 1:778201‑M1/1‑1 (MQ=255) | TTGCCGAACAATGTGGTCTTTAGTTTCATAAGTCGTTCCCTCAGGAAGAATCGATGATTGGCATTTTTCACAGCATTCTAACAATCACGTTTCATCG > NC_000913/2558651‑2558747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |