| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,466,545 | Δ9,634 bp | [intS]–[ypdJ] | 15 genes [intS], yfdG, yfdH, yfdI, yfdK, yfdL, yfdM, yfdN, yfdO, yfdP, yfdQ, yfdR, yfdS, [yfdT], [ypdJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2466545 | 2476178 | 9634 | 59 [0] | [0] 58 | [intS]–[ypdJ] | [intS],yfdG,yfdH,yfdI,yfdK,yfdL,yfdM,yfdN,yfdO,yfdP,yfdQ,yfdR,yfdS,[yfdT],[ypdJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2466544 | 0 (0.000) | 56 (0.970) | 38/98 | 0.1 | 100% | intergenic (+161/‑1) | argW/intS | tRNA‑Arg/CPS‑53 (KpLE1) prophage; prophage CPS‑53 integrase |
| ? | NC_000913 | 2476179 = | 0 (0.000) | coding (86/141 nt) | ypdJ | CPS‑53 (KpLE1) prophage; putative uncharacterized protein YpdJ | |||||
GAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476132‑2476228 | acgggtaaaaagtggataaaataattttacccaccggatttttacccTa < 1:306691‑M2/2‑1 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:2614929‑M2/46‑50 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:1117584‑M2/46‑50 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:507199‑M2/46‑50 (MQ=255) gggtaaaaagtggataaaataattttacccaccggatttttacccTagag > 1:3442616‑M2/46‑50 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:154389‑M2/44‑49 (MQ=255) gtaaaaagtggataaaataattttacccaccggatttttacccTAGAGc > 1:3567392‑M2/44‑49 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa > 1:742647‑M2/43‑50 (MQ=255) taaaaagtggataaaataattttacccaccggatttttacccTAGAGCCa < 1:644228‑M2/8‑1 (MQ=255) aaaagtggataaaataattttacccaccggatttttacccTAGAGCCAt < 1:2668463‑M2/9‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:4331591‑M2/13‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:4231248‑M2/13‑1 (MQ=255) agtggataaaataattttacccaccggatttttacccTAGAGCCATACAg < 1:1062889‑M2/13‑1 (MQ=255) tggataaaataattttacccaccggatttttacccTAGAGCCATACAGcc < 1:1520223‑M2/15‑1 (MQ=255) ggataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:2393002‑M2/35‑50 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt < 1:3634546‑M2/16‑1 (MQ=255) gataaaataattttacccaccggatttttacccTAGAGCCATACAGCCt > 1:4236890‑M2/34‑49 (MQ=255) ataaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:1204346‑M2/33‑50 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:1084089‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:1724112‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTcac < 1:1835840‑M2/19‑1 (MQ=255) taaaataattttacccaccggatttttacccTAGAGCCATACAGCCTca > 1:2420273‑M2/32‑49 (MQ=255) aataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACt < 1:39862‑M2/22‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc < 1:757985‑M2/23‑1 (MQ=255) ataattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4011119‑M2/28‑50 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:2367673‑M2/27‑49 (MQ=255) taattttacccaccggatttttacccTAGAGCCATACAGCCTCACACTc > 1:4208805‑M2/27‑49 (MQ=255) attttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt < 1:462307‑M2/26‑1 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:4365740‑M2/24‑49 (MQ=255) ttttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGAt > 1:770056‑M2/24‑49 (MQ=255) ttacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAg > 1:2443438‑M2/22‑50 (MQ=255) tacccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg > 1:2875210‑M2/21‑50 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAgg < 1:1427844‑M2/30‑1 (MQ=255) acccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGc > 1:3059858‑M2/20‑50 (MQ=255) cccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGcc < 1:2058502‑M2/32‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt < 1:3024811‑M2/33‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:1993657‑M2/18‑50 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt < 1:841950‑M2/33‑1 (MQ=255) ccaccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCt > 1:3100029‑M2/18‑50 (MQ=255) ccggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTc < 1:1998059‑M2/36‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg > 1:3854787‑M2/13‑50 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg < 1:547072‑M2/38‑1 (MQ=255) ggatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAg < 1:2276909‑M2/38‑1 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 1:896146‑M2/12‑50 (MQ=255) gatttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGt > 1:3443967‑M2/12‑50 (MQ=255) atttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGtt < 1:3769153‑M2/40‑1 (MQ=255) tttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGttt > 1:1252481‑M2/10‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:4339292‑M2/9‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:3595525‑M2/9‑50 (MQ=255) ttttacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTc > 1:3128496‑M2/9‑50 (MQ=255) tacccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCtt < 1:4305455‑M2/44‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:3842667‑M2/47‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaaa < 1:2202384‑M2/47‑1 (MQ=255) cccTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTaa < 1:2798674‑M2/46‑1 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAt < 1:4033854‑M2/49‑1 (MQ=255) cTAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAAt < 1:1107682‑M2/49‑1 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:4337660/1‑50 (MQ=255) taGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAata > 1:3737483/1‑50 (MQ=255) | GAGCTGGTATCCATTTTTCAACAATGTCACAACAAGAGGTGAAATAATAGAGCCATACAGCCTCACACTCGATGAGGCCTGTCAGTTTCTTAAAATA > NC_000913/2476132‑2476228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |