| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 58 [0] | [0] 56 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 53 (0.930) | 41/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
GTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596968‑4597063 | agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:1824331‑M2/47‑50 (MQ=255)agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:4327886‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:1831716‑M2/4‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg < 1:4429810‑M2/4‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:341059‑M2/45‑49 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:3076843‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCgag < 1:792920‑M2/8‑1 (MQ=255) ctgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:2867484‑M2/41‑50 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:3240316‑M2/40‑49 (MQ=255) tgtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGat > 1:2758937‑M2/40‑49 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtATGGCgaga < 1:3125057‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:2415651‑M2/9‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:169932‑M2/37‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:3777388‑M2/14‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa < 1:2185047‑M2/16‑1 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:1088428‑M2/32‑50 (MQ=255) tgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt > 1:698588‑M2/31‑50 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:161682‑M2/30‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:2829865‑M2/21‑1 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:1133797‑M2/28‑49 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa > 1:4297706‑M2/27‑50 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 1:2692976‑M2/26‑50 (MQ=255) gttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt > 1:4372880‑M2/26‑50 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:3681732‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:942997‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:3276358‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:387307‑M2/26‑1 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:3351663‑M2/23‑48 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGc < 1:1101516‑M2/27‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:3656799‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:2461221‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg > 1:587540‑M2/22‑50 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:3363844‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:2401961‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:3884060‑M2/30‑1 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:3890202‑M2/20‑50 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg < 1:2621722‑M2/31‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:921667‑M2/32‑1 (MQ=255) ctcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGt < 1:833345‑M2/32‑1 (MQ=255) cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc > 1:757030‑M2/17‑50 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:1281699‑M2/36‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg < 1:4191028‑M2/36‑1 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:1525887‑M2/13‑49 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:517743‑M2/11‑48 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:786424‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa < 1:3981782‑M2/39‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:2429356‑M2/10‑50 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:2911298‑M2/10‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:3418989‑M2/42‑1 (MQ=255) tggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg > 1:1959467‑M2/8‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt < 1:4102570‑M2/45‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:4049204‑M2/46‑1 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 1:3901378‑M2/4‑50 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:1217912‑M2/49‑1 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:1832013/1‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:4322485/1‑50 (MQ=255) | GTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596968‑4597063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |