| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 38.7% | 102.3 / 150.5 | 119 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (36/37); new base T (17/29); total (53/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.79e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 125 total aligned reads displayed.
GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGC > NC_000913/4296011‑4296107 | gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:257842/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:3156702/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc > 1:3468305/1‑50 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:3952812/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:128187/50‑1 (MQ=38)gCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAAc < 1:2625285/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:3827682/50‑1 (MQ=38) cGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACg < 1:1443692/50‑1 (MQ=38) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc < 1:1159896/50‑1 (MQ=255) gTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc > 1:2986823/1‑50 (MQ=255) tGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGcc < 1:1278212/50‑1 (MQ=255) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:491745/1‑50 (MQ=38) gATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt > 1:1339061/1‑50 (MQ=38) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:1110332/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:4273482/1‑49 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt < 1:867815/49‑1 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:1858050/1‑49 (MQ=255) aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt < 1:3494299/49‑1 (MQ=38) aTTTTGTAGGACGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt > 1:3306110/1‑49 (MQ=11) ttttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa < 1:615757/50‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt < 1:333678/49‑1 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:1533474/1‑50 (MQ=255) ttGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg > 1:3137594/1‑50 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATg < 1:1750391/49‑1 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc > 1:1769216/1‑50 (MQ=255) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATg < 1:2999456/49‑1 (MQ=38) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGc > 1:3478811/1‑50 (MQ=38) gaaGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:648381/47‑1 (MQ=11) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:1121905/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:3274940/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc > 1:3577087/1‑49 (MQ=255) gTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGc < 1:3589302/49‑1 (MQ=255) gTAGGTCGGATAAGGCGTTTACACCGCATCCGACATCAACGCCTGATGc > 1:2424562/1‑49 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCg < 1:1376980/49‑1 (MQ=255) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCg < 1:742256/49‑1 (MQ=38) tAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa > 1:579288/1‑50 (MQ=38) aGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGAc > 1:2779097/1‑50 (MQ=38) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGAc < 1:1842108/49‑1 (MQ=255) ggTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACg > 1:1893142/1‑50 (MQ=38) gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGc > 1:2853575/1‑50 (MQ=38) tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCt < 1:180673/50‑1 (MQ=38) cGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt > 1:2645710/1‑50 (MQ=38) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:2205553/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCtt < 1:243670/49‑1 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:2728845/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTg > 1:3746866/1‑50 (MQ=255) ggATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTg < 1:1648459/50‑1 (MQ=40) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc > 1:1501573/1‑50 (MQ=255) gATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc < 1:30590/50‑1 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc > 1:251539/1‑50 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc > 1:1450892/1‑50 (MQ=255) aTAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGcc < 1:3370673/50‑1 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:383852/1‑50 (MQ=255) aaGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc > 1:1596196/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg > 1:1788408/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg > 1:4172965/1‑50 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgcg < 1:2340688/50‑1 (MQ=255) aGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgcg > 1:457726/1‑50 (MQ=255) ggCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 1:2491416/50‑1 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:2268319/1‑50 (MQ=255) ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGt < 1:4254335/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 1:2191571/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 1:2118456/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt < 1:885590/50‑1 (MQ=255) cGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:2300689/1‑50 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCtt < 1:2468639/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCt > 1:1224332/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:2215458/50‑1 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:908981/1‑49 (MQ=255) gTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCt > 1:2393602/1‑49 (MQ=255) tttACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTa < 1:513658/50‑1 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:912147/1‑50 (MQ=255) tttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa > 1:3375419/1‑50 (MQ=255) ttACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt > 1:2531245/1‑50 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:893816/49‑1 (MQ=255) tACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTAt < 1:7675/49‑1 (MQ=255) aCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 1:3442721/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:1202317/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa < 1:4195511/49‑1 (MQ=255) cgccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg < 1:565576/50‑1 (MQ=255) ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc > 1:2030343/1‑50 (MQ=38) cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:3611794/1‑50 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:4101100/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:1771711/1‑49 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:2281855/50‑1 (MQ=38) gcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCt < 1:848601/50‑1 (MQ=38) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:2024948/1‑50 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:2752081/1‑50 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:3375183/50‑1 (MQ=40) aTCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc < 1:2290191/50‑1 (MQ=40) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc < 1:1819533/50‑1 (MQ=255) cGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:2929218/1‑49 (MQ=255) aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc > 1:3688263/1‑47 (MQ=255) aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAg < 1:3916170/50‑1 (MQ=255) tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 1:3792937/50‑1 (MQ=255) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg > 1:1379865/1‑50 (MQ=40) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAg > 1:3902100/1‑50 (MQ=40) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:2232279/50‑1 (MQ=38) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:2636320/50‑1 (MQ=38) aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgc < 1:4402897/50‑1 (MQ=38) | GCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGC > NC_000913/4296011‑4296107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |