| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,154,362 | C→T | A84V (GCC→GTC) | mltG → | endolytic murein transglycosylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,154,362 | 0 | C | T | 96.2% | 201.9 / ‑0.9 | 53 | A84V (GCC→GTC) | mltG | endolytic murein transglycosylase |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (26/25); total (27/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.21e-01 | |||||||||||
TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCT > NC_000913/1154316‑1154407 | tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:3754075/1‑50 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:3863859/1‑50 (MQ=255)tttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCgg > 1:4202782/1‑50 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:2391807/1‑49 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:1699418/1‑49 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg < 1:1908709/49‑1 (MQ=255) ttCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCgg > 1:3008908/1‑49 (MQ=255) tCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCggg < 1:3857055/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGAc < 1:373497/49‑1 (MQ=255) aaTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt < 1:1139189/50‑1 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACtt < 1:3088157/50‑1 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt > 1:2402165/1‑49 (MQ=255) aTGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACt > 1:3913953/1‑49 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:4102671/50‑1 (MQ=255) ctgctgCGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCg < 1:4234725/50‑1 (MQ=255) tgctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGc > 1:32834/1‑50 (MQ=255) ctgcGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCtt < 1:3795652/50‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCttt < 1:1245685/48‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCttt < 1:2162588/48‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTac < 1:3567128/50‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTa < 1:4343833/49‑1 (MQ=255) cGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTac < 1:3734054/50‑1 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:2184960/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:1553600/1‑50 (MQ=255) gTATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTaca > 1:639410/1‑50 (MQ=255) tATCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTacac < 1:1387480/50‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:2840324/49‑1 (MQ=255) tCGAACCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACAcc < 1:3257603/49‑1 (MQ=255) aCCGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGa < 1:1602072/50‑1 (MQ=255) ccGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt < 1:4404059/50‑1 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 1:3944980/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 1:2042810/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGAt > 1:2654129/1‑49 (MQ=255) cGGATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATg < 1:3681809/50‑1 (MQ=255) ggATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGa > 1:2539568/1‑50 (MQ=255) gATCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAc < 1:3197434/50‑1 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 1:1498428/1‑50 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 1:3120634/1‑50 (MQ=255) aTCTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc > 1:1565420/1‑50 (MQ=255) cTTTCTCACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGt > 1:170301/1‑50 (MQ=255) tctcACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGAcc < 1:3148135/45‑1 (MQ=255) cACTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:3479717/1‑48 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc < 1:3072545/47‑1 (MQ=255) aCTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCga < 1:3276996/49‑1 (MQ=255) cTTTAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTgcgc > 1:64960/1‑46 (MQ=255) tttAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGAt > 1:1396812/1‑50 (MQ=255) ttAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATg > 1:429904/1‑50 (MQ=255) tAAAGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATg < 1:629093/49‑1 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:2373235/1‑50 (MQ=255) aaaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:3233725/1‑50 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt > 1:4289679/1‑49 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 1:2734804/49‑1 (MQ=255) aaGTCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCt < 1:552404/49‑1 (MQ=255) | TTTCAATGGCTGCTGCGTATCGAACCGGATCTTTCTCACTTTAAAGCCGGGACTTACCGCTTTACACCGCAGATGACCGTGCGCGAGATGCT > NC_000913/1154316‑1154407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |