BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,400,309	Δ1 bp	coding (1465/1527 nt)	abgT ←	p‑aminobenzoyl glutamate:H(+) symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,400,308	0	A	.	100.0%	477.8 / NA	96	coding (1466/1527 nt)	abgT	p‑aminobenzoyl glutamate:H(+) symporter
Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (49/47); total (49/47)

Only 100 of 102 total aligned reads displayed.

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

tGGGTAAATACCCGGACCTATCGGGAGACCGACAAGATACCACGCCAGCa                                               <  1:4718692/50‑1 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACACGATACCACGCCAGCaca                                             >  1:8080003/1‑48 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             <  1:8142625/50‑3 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             <  1:4315528/50‑3 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaca                                             >  1:3839015/1‑48 (MQ=255)

  ggTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCac                                              <  1:1667411/49‑2 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:8362303/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:4460027/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:7061090/50‑1 (MQ=255)

           ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  <  1:5612766/50‑1 (MQ=255)

            cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa                                  >  1:359003/1‑49 (MQ=38)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:4507532/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:6955792/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:6921358/50‑1 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                >  1:8439757/1‑50 (MQ=255)

             ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa                                <  1:4192937/50‑1 (MQ=255)

              gcccTATCGGCAGACCGACAAGATGCCACGCCAGC‑ACATC‑GCAGCCATac                               <  1:1306733/48‑1 (MQ=25)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  1:2989511/1‑50 (MQ=255)

              gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               <  1:3685955/50‑1 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:6378805‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:2374586‑M1/49‑2 (MQ=255)

               acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt                              <  1:6570235‑M1/49‑2 (MQ=255)

               aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac                               >  1:8354460/1‑49 (MQ=38)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:7640571‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:6683874‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:1195807‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             >  1:2823167‑M1/1‑48 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:2353524‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:7871804‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             >  1:1717903‑M1/1‑48 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta                             <  1:1478150‑M1/50‑3 (MQ=255)

                ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACA‑CCGCAGCCATACta                             <  1:8371207‑M1/50‑3 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            >  1:1709163‑M1/1‑47 (MQ=255)

                 cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat                            <  1:800820‑M1/50‑4 (MQ=255)

                  tATCTGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:564403‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:7903895‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:955271‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3455098‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:7292492‑M1/1‑46 (MQ=255)

                  tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCACCCATACtatg                           >  1:4872757‑M1/1‑46 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca                         <  1:5573707‑M1/50‑7 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:3466558‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc                          <  1:5157362‑M1/49‑6 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           <  1:4096634‑M1/48‑5 (MQ=255)

                    tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:8303136‑M1/1‑44 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCTAGC‑ACATC‑GCAGCCATACtatg                           >  1:5112820‑M1/1‑43 (MQ=255)

                     cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg                           >  1:3694191‑M1/1‑43 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       <  1:7153568‑M1/50‑9 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga                       <  1:527902‑M1/50‑9 (MQ=255)

                      ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag                        >  1:7712694‑M1/1‑42 (MQ=255)

                       gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa                      <  1:5964704‑M1/50‑10 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:7938721‑M1/1‑40 (MQ=255)

                        cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     <  1:7208236‑M1/50‑11 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:5437435‑M1/1‑39 (MQ=255)

                         aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa                     >  1:1808052‑M1/1‑39 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  1:1132381‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca                   <  1:1764253‑M1/50‑13 (MQ=255)

                          gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac                    >  1:6176613‑M1/1‑38 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  >  1:6371714‑M1/1‑37 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  <  1:4539608‑M1/50‑14 (MQ=255)

                           aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa                  <  1:357476‑M1/50‑14 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 >  1:8139247‑M1/1‑36 (MQ=255)

                            ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat                 <  1:1236618‑M1/50‑15 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                <  1:6461665‑M1/50‑16 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:7294064‑M1/1‑35 (MQ=255)

                             cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg                >  1:4242184‑M1/1‑35 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               <  1:6457879‑M1/50‑17 (MQ=255)

                              gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc               >  1:5064979‑M1/1‑34 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:7717683‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              <  1:8556905‑M1/50‑18 (MQ=255)

                               aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct              >  1:3791966‑M1/1‑33 (MQ=255)

                                cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg             >  1:7211206‑M1/1‑32 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:7044678‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:1932386‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:6795176‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:8275288‑M1/1‑31 (MQ=255)

                                 aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt            >  1:8046834‑M1/1‑31 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGTCATACtatgcagaaacaatgctgtc           <  1:7583968‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:2673315‑M1/1‑30 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           <  1:1791748‑M1/50‑21 (MQ=255)

                                  aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:1660721‑M1/1‑30 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg          <  1:658536‑M1/50‑22 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:1171619‑M1/1‑29 (MQ=255)

                                   gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc           >  1:5446946‑M1/1‑29 (MQ=255)

                                    aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga         <  1:4889959‑M1/50‑23 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        <  1:3768618‑M1/50‑24 (MQ=255)

                                     tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat        >  1:8265604‑M1/1‑27 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      <  1:5568064‑M1/50‑26 (MQ=255)

                                       ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg      >  1:5239990‑M1/1‑25 (MQ=255)

                                        cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc     >  1:4758792‑M1/1‑24 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:1460340‑M1/1‑23 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:3809948‑M1/50‑28 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    <  1:4290804‑M1/50‑28 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:5804664‑M1/1‑23 (MQ=255)

                                         aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct    >  1:6862613‑M1/1‑23 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   >  1:5990133‑M1/1‑22 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   >  1:6043228‑M1/1‑22 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg   <  1:7199055‑M1/50‑29 (MQ=255)

                                          cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgagggctg   <  1:6570321‑M1/50‑29 (MQ=255)

                                           gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc  >  1:3829003‑M1/1‑21 (MQ=255)

TGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA  >  NC_000913/1400259‑1400353

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`