| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,400,314 | Δ1 bp | coding (1460/1527 nt) | abgT ← | p‑aminobenzoyl glutamate:H(+) symporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,400,314 | 0 | A | . | 99.0% | 475.0 / ‑2.0 | 96 | coding (1460/1527 nt) | abgT | p‑aminobenzoyl glutamate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base . (49/46); minor base C (0/1); total (49/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.88e-01 | |||||||||||
CCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA > NC_000913/1400270‑1400353 | ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:5612766/50‑1 (MQ=255)ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:8362303/50‑1 (MQ=255)ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:7061090/50‑1 (MQ=255)ccGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa < 1:4460027/50‑1 (MQ=255) cGGACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCa > 1:359003/1‑49 (MQ=38) ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa < 1:6921358/50‑1 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa < 1:6955792/50‑1 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa < 1:4192937/50‑1 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa > 1:8439757/1‑50 (MQ=255) ggACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATa > 1:4507532/1‑50 (MQ=255) gcccTATCGGCAGACCGACAAGATGCCACGCCAGC‑ACATC‑GCAGCCATac < 1:1306733/48‑1 (MQ=25) gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac < 1:3685955/50‑1 (MQ=255) gACCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 1:2989511/1‑50 (MQ=255) acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt < 1:6570235‑M1/49‑2 (MQ=255) acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt < 1:2374586‑M1/49‑2 (MQ=255) acctATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACt < 1:6378805‑M1/49‑2 (MQ=255) aCCTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATac > 1:8354460/1‑49 (MQ=38) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:6683874‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:7871804‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:7640571‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta > 1:2823167‑M1/1‑48 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:2353524‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:1195807‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta < 1:1478150‑M1/50‑3 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACta > 1:1717903‑M1/1‑48 (MQ=255) ccTATCGGCAGACCGACAAGATACCACGCCAGC‑ACA‑CCGCAGCCATACta < 1:8371207‑M1/50‑3 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat < 1:800820‑M1/50‑4 (MQ=255) cTATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtat > 1:1709163‑M1/1‑47 (MQ=255) tATCTGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:564403‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:7903895‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:7292492‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:955271‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:3455098‑M1/1‑46 (MQ=255) tATCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCACCCATACtatg > 1:4872757‑M1/1‑46 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgca < 1:5573707‑M1/50‑7 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:3466558‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgc < 1:5157362‑M1/49‑6 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg < 1:4096634‑M1/48‑5 (MQ=255) tCGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:8303136‑M1/1‑44 (MQ=255) cGGCAGACCGACAAGATACCACGCTAGC‑ACATC‑GCAGCCATACtatg > 1:5112820‑M1/1‑43 (MQ=255) cGGCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatg > 1:3694191‑M1/1‑43 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:7153568‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcaga < 1:527902‑M1/50‑9 (MQ=255) ggCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcag > 1:7712694‑M1/1‑42 (MQ=255) gCAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaa < 1:5964704‑M1/50‑10 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:7938721‑M1/1‑40 (MQ=255) cAGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa < 1:7208236‑M1/50‑11 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:5437435‑M1/1‑39 (MQ=255) aGACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaa > 1:1808052‑M1/1‑39 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 1:1132381‑M1/50‑13 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaaca < 1:1764253‑M1/50‑13 (MQ=255) gACCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaac > 1:6176613‑M1/1‑38 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa > 1:5501641‑M1/1‑37 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa < 1:4539608‑M1/50‑14 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa > 1:6371714‑M1/1‑37 (MQ=255) aCCGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaa < 1:357476‑M1/50‑14 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat > 1:8139247‑M1/1‑36 (MQ=255) ccGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaat < 1:1236618‑M1/50‑15 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:7294064‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg > 1:4242184‑M1/1‑35 (MQ=255) cGACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatg < 1:6461665‑M1/50‑16 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:977811‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc > 1:5064979‑M1/1‑34 (MQ=255) gACAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgc < 1:6457879‑M1/50‑17 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:7717683‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct < 1:8556905‑M1/50‑18 (MQ=255) aCAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgct > 1:3791966‑M1/1‑33 (MQ=255) cAAGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctg > 1:7211206‑M1/1‑32 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:1932386‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:8046834‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:8275288‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:7044678‑M1/1‑31 (MQ=255) aaGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgt > 1:6795176‑M1/1‑31 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGTCATACtatgcagaaacaatgctgtc < 1:7583968‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:2673315‑M1/1‑30 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc < 1:1791748‑M1/50‑21 (MQ=255) aGATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:1660721‑M1/1‑30 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcg < 1:658536‑M1/50‑22 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:1171619‑M1/1‑29 (MQ=255) gATACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtc > 1:5446946‑M1/1‑29 (MQ=255) aTACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcga < 1:4889959‑M1/50‑23 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat < 1:3768618‑M1/50‑24 (MQ=255) tACCACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgat > 1:8265604‑M1/1‑27 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg < 1:5568064‑M1/50‑26 (MQ=255) ccACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatgg > 1:5239990‑M1/1‑25 (MQ=255) cACGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggc > 1:4758792‑M1/1‑24 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 1:3809948‑M1/50‑28 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct < 1:4290804‑M1/50‑28 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:5804664‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:6862613‑M1/1‑23 (MQ=255) aCGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggct > 1:1460340‑M1/1‑23 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg < 1:7199055‑M1/50‑29 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg > 1:5990133‑M1/1‑22 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctg > 1:6043228‑M1/1‑22 (MQ=255) cGCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgagggctg < 1:6570321‑M1/50‑29 (MQ=255) gCCAGC‑ACATC‑GCAGCCATACtatgcagaaacaatgctgtcgatggctgc > 1:3829003‑M1/1‑21 (MQ=255) | CCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGATAAGTGGATAGGGCAAGA > NC_000913/1400270‑1400353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |