Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,090,341 Δ1 bp intergenic (+89/‑6) yggI → / → endA conserved protein YggI/DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,090,3410T.100.0% 473.2 / NA 94intergenic (+89/‑6)yggI/endAconserved protein YggI/DNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (46/48);  total (46/48)

ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC  >  NC_000913/3090296‑3090385
                                             |                                            
aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                         >  1:7079160/1‑50 (MQ=255)
 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg                                         <  1:2484920/49‑1 (MQ=255)
 ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc                                        <  1:5577497‑M1/50‑2 (MQ=255)
  cAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                       >  1:3195022‑M1/1‑48 (MQ=255)
   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcct                                      <  1:4542426‑M1/50‑4 (MQ=255)
   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                       >  1:7885140‑M1/1‑47 (MQ=255)
   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                       >  1:8444061‑M1/1‑47 (MQ=255)
   aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc                                       >  1:6448168‑M1/1‑47 (MQ=255)
    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     <  1:7730306‑M1/50‑5 (MQ=255)
    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     <  1:1850098‑M1/50‑5 (MQ=255)
    aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta                                     >  1:4407493‑M1/1‑46 (MQ=255)
     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                    <  1:128747‑M1/50‑6 (MQ=255)
     aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctac                                    <  1:7090678‑M1/50‑6 (MQ=255)
      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                   <  1:3005404‑M1/50‑7 (MQ=255)
      aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca                                   <  1:3061984‑M1/50‑7 (MQ=255)
       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  <  1:3504571‑M1/50‑8 (MQ=255)
       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  <  1:2535690‑M1/50‑8 (MQ=255)
       cAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  >  1:5312770‑M1/1‑43 (MQ=255)
        aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac                                  >  1:3911184‑M1/1‑42 (MQ=255)
         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                <  1:1771960‑M1/50‑10 (MQ=255)
         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacta                                <  1:3031349‑M1/50‑10 (MQ=255)
         gCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacaata                                <  1:3091266‑M1/50‑10 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               <  1:5227846‑M1/50‑11 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               <  1:1272026‑M1/50‑11 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               >  1:6814688‑M1/1‑40 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               >  1:7768489‑M1/1‑40 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               <  1:2946804‑M1/50‑11 (MQ=255)
          cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag                               >  1:1365435‑M1/1‑40 (MQ=255)
             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:7539109‑M1/1‑37 (MQ=255)
             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg                             <  1:6770918‑M1/49‑13 (MQ=255)
             tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc                              <  1:3812331‑M1/48‑12 (MQ=255)
              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            <  1:2699643‑M1/49‑14 (MQ=255)
              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:6299606‑M1/1‑36 (MQ=255)
              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:2270297‑M1/1‑36 (MQ=255)
              cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg                            >  1:5152852‑M1/1‑36 (MQ=255)
               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                          >  1:956736‑M1/1‑35 (MQ=255)
               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga                          <  1:5186906‑M1/50‑16 (MQ=255)
               gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggg                           <  1:2251407‑M1/49‑15 (MQ=255)
                cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat                         <  1:7919807‑M1/50‑17 (MQ=255)
                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  1:6153506‑M1/1‑33 (MQ=255)
                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  1:2976115‑M1/1‑33 (MQ=255)
                 tACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt                        >  1:7070068‑M1/1‑33 (MQ=255)
                  aCGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                       >  1:3664364‑M1/1‑32 (MQ=255)
                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct                      <  1:3617884‑M1/50‑20 (MQ=255)
                   cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattc                       <  1:6906099‑M1/49‑19 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     <  1:2566692‑M1/50‑21 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:8330432‑M1/1‑30 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:8108855‑M1/1‑30 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:7906039‑M1/1‑30 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:3606194‑M1/1‑30 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:3558073‑M1/1‑30 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     <  1:4662054‑M1/50‑21 (MQ=255)
                    gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt                     >  1:3936185‑M1/1‑30 (MQ=255)
                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    <  1:821909‑M1/50‑22 (MQ=255)
                     ttGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    <  1:578730‑M1/50‑22 (MQ=255)
                     ttGCCGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttt                    >  1:1276473‑M1/1‑29 (MQ=255)
                      tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   >  1:3444406‑M1/1‑28 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  >  1:4643808‑M1/1‑27 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  1:2678520‑M1/49‑23 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  1:872409‑M1/49‑23 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  1:2234484‑M1/49‑23 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt                   <  1:5759135‑M1/49‑23 (MQ=255)
                       gCTGGCTCGTTTTAACACGGAG‑AAGGGcctacactagcgggattctttt                   <  1:4093826‑M1/49‑23 (MQ=255)
                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg                 <  1:2377525‑M1/50‑25 (MQ=255)
                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  <  1:7677597‑M1/49‑24 (MQ=255)
                        cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt                  <  1:3442780‑M1/49‑24 (MQ=255)
                         tGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                >  1:8020062‑M1/1‑25 (MQ=255)
                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta              <  1:2457326‑M1/50‑28 (MQ=255)
                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt               >  1:2139325‑M1/1‑23 (MQ=255)
                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt               >  1:1041138‑M1/1‑23 (MQ=255)
                           gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt                <  1:1959958‑M1/48‑26 (MQ=255)
                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             <  1:4969114‑M1/50‑29 (MQ=255)
                            cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa             >  1:5349873‑M1/1‑22 (MQ=255)
                             tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac            >  1:3855854‑M1/1‑21 (MQ=255)
                             tCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac            >  1:7043675‑M1/1‑21 (MQ=255)
                              cGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc           >  1:1272685‑M1/1‑20 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:3970684‑M1/1‑19 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:6803244‑M1/1‑19 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:5277129‑M1/1‑19 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:6117983‑M1/1‑19 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc          >  1:5523179‑M1/1‑19 (MQ=255)
                               gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc           <  1:336771‑M1/49‑31 (MQ=255)
                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         <  1:755983‑M1/50‑33 (MQ=255)
                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         <  1:7835409‑M1/50‑33 (MQ=255)
                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         >  1:6967188‑M1/1‑18 (MQ=255)
                                ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc         <  1:3427811‑M1/50‑33 (MQ=255)
                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta       <  1:3215830‑M1/49‑35 (MQ=255)
                                   tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta       <  1:1419456‑M1/49‑35 (MQ=255)
                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     >  1:1856248‑M1/1‑14 (MQ=255)
                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     >  1:3579312‑M1/1‑14 (MQ=255)
                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc     >  1:6017482‑M1/1‑14 (MQ=255)
                                    aaCACGGAG‑AAGTGcctacactagcgggattctttttgttaacccctac      <  1:5457098‑M1/49‑36 (MQ=255)
                                      cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc    >  1:3698537‑M1/1‑12 (MQ=255)
                                       acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca  <  1:6635604‑M1/50‑40 (MQ=255)
                                             |                                            
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGC  >  NC_000913/3090296‑3090385

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑