| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 380,022 | 1 | . | G | 77.4% | 257.1 / 71.9 | 84 | intergenic (‑141/+47) | frmR/yaiO | DNA‑binding transcriptional repressor FrmR/outer membrane protein YaiO |
| Reads supporting (aligned to +/- strand): ref base . (11/8); new base G (26/39); total (37/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.41e-01 | |||||||||||
ATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCA > NC_000913/379979‑380071 | aTCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCg > 1:4362137/1‑50 (MQ=255) ttatccggtgaatgtggtcggaatacaaagcggaaaGGGGGGG‑CTAATCg < 1:2261085‑M1/14‑1 (MQ=255) ttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATc < 1:8461278‑M1/14‑1 (MQ=255) ttatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATc < 1:4417645‑M1/14‑1 (MQ=255) tatccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATc > 1:6394795‑M1/36‑49 (MQ=255) atccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCgg < 1:6362498‑M1/16‑1 (MQ=255) atccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCgg < 1:6126106‑M1/16‑1 (MQ=255) tccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCgg < 1:6346471‑M1/16‑1 (MQ=255) ccggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCgg < 1:898903‑M1/16‑1 (MQ=255) cggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAg > 1:6630595‑M1/32‑50 (MQ=255) cggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAg < 1:1998619‑M1/19‑1 (MQ=255) cggtgaatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAgg > 1:6534560‑M1/32‑50 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg < 1:6361559‑M1/20‑1 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg < 1:5184097‑M1/20‑1 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg > 1:2431402‑M1/31‑50 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg < 1:2836293‑M1/20‑1 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg < 1:3448912‑M1/20‑1 (MQ=255) ggtgaatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAggg > 1:5278542‑M1/31‑50 (MQ=255) gtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAggg > 1:5376981‑M1/30‑50 (MQ=255) gtgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAgg < 1:3358303‑M1/20‑1 (MQ=255) tgaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGa > 1:4711451‑M1/29‑50 (MQ=255) gaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAggg < 1:1882468‑M1/21‑1 (MQ=255) gaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAggg < 1:2315286‑M1/21‑1 (MQ=255) gaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAggg < 1:4573651‑M1/21‑1 (MQ=255) gaatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAggg < 1:130192‑M1/21‑1 (MQ=255) aatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAg < 1:5736685‑M1/24‑1 (MQ=255) aatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAg > 1:2567161‑M1/27‑50 (MQ=255) aatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAg > 1:6069635‑M1/27‑50 (MQ=255) aatgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAg < 1:1781641‑M1/24‑1 (MQ=255) aatgtggtcggaaaacaaagaggaaaGGGGGGG‑CTAATCGGCAGGGAAgg > 1:2055058‑M1/27‑50 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGgcc < 1:4533653/50‑1 (MQ=255) tgGTCGGAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGgc < 1:1519820/49‑1 (MQ=255) atgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAgg > 1:3090215‑M1/26‑50 (MQ=255) atgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAgg < 1:4134998‑M1/25‑1 (MQ=255) atgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAgg < 1:7860866‑M1/25‑1 (MQ=255) tgtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgc > 1:3709388‑M1/25‑50 (MQ=255) gtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgcc < 1:6870591‑M1/27‑1 (MQ=255) gtggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgcc < 1:7956495‑M1/27‑1 (MQ=255) gTCGGAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGgccg < 1:7689520/49‑1 (MQ=255) tggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccg < 1:5154551‑M1/28‑1 (MQ=255) tggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccg < 1:1650660‑M1/28‑1 (MQ=255) tggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgcc > 1:144553‑M1/23‑49 (MQ=255) tggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgcc > 1:7305289‑M1/23‑49 (MQ=255) ggtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccgc < 1:6677116‑M1/29‑1 (MQ=255) gtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccgcc < 1:1875096‑M1/30‑1 (MQ=255) gtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccgcc < 1:311974‑M1/30‑1 (MQ=255) gtcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGgccgcc < 1:7284206‑M1/30‑1 (MQ=255) tcggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGccc > 1:1597432‑M1/20‑50 (MQ=255) gAAAACAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCg > 1:7300056/1‑50 (MQ=255) ggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg < 1:2153350‑M1/33‑1 (MQ=255) ggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCg < 1:7965486‑M1/33‑1 (MQ=255) ggaaaacaaagaggaaaGGGGGGGGCTAATCGGCAAGGAAGGCCGcccc > 1:3485253‑M1/18‑49 (MQ=255) gaaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCgg > 1:3677553‑M1/17‑50 (MQ=255) aaaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGa > 1:8132692‑M1/16‑50 (MQ=255) cAAAGAGGAAA‑GGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAg > 1:3182014/1‑50 (MQ=255) aaacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGAt > 1:7229852‑M1/15‑50 (MQ=255) aacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATa > 1:7180281‑M1/14‑50 (MQ=255) aacaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATa > 1:3347301‑M1/14‑50 (MQ=255) acaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 1:1497399‑M1/38‑1 (MQ=255) acaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg > 1:8387409‑M1/13‑50 (MQ=255) acaaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAg < 1:233372‑M1/38‑1 (MQ=255) caaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc > 1:3378836‑M1/12‑50 (MQ=255) caaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc < 1:787448‑M1/39‑1 (MQ=255) caaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgc < 1:359791‑M1/39‑1 (MQ=255) aaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcg > 1:2364081‑M1/11‑50 (MQ=255) aaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcg < 1:2517623‑M1/40‑1 (MQ=255) aaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcg < 1:4087243‑M1/40‑1 (MQ=255) aaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcg < 1:3345602‑M1/40‑1 (MQ=255) aaagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcg < 1:890625‑M1/40‑1 (MQ=255) aagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgg > 1:160535‑M1/10‑50 (MQ=255) aagaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgg > 1:3382936‑M1/10‑50 (MQ=255) gaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc > 1:707652‑M1/8‑50 (MQ=255) gaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc > 1:3882886‑M1/8‑50 (MQ=255) gaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc < 1:1080744‑M1/43‑1 (MQ=255) gaggaaaGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc > 1:1003986‑M1/8‑50 (MQ=255) aagggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:1420680/3‑47 (MQ=255) aagggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:4216885/3‑47 (MQ=255) agggtgggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGa < 1:1847715/49‑1 (MQ=255) agggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAg > 1:6232203/2‑49 (MQ=255) agggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGa < 1:1334218/49‑1 (MQ=255) gggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAg > 1:3066535/1‑48 (MQ=255) gggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGaa < 1:7888977/50‑1 (MQ=255) gggggggg‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGaa < 1:3832574/50‑1 (MQ=255) GGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg > 1:3423885‑M1/1‑50 (MQ=255) GGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg > 1:1380020‑M1/1‑50 (MQ=255) GGGGGG‑CTAATCGGCAGGGAAGGCCTCCCCGGATAGCGGGCGGCAGAAg < 1:4884337‑M1/49‑1 (MQ=255) GGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg < 1:3820051‑M1/49‑1 (MQ=255) GGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAg < 1:2276084‑M1/49‑1 (MQ=255) GGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAAt > 1:7105592‑M1/1‑50 (MQ=255) GG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATc > 1:2081244‑M1/1‑50 (MQ=255) G‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAAt < 1:4291488‑M1/48‑1 (MQ=255) G‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCa > 1:8041751‑M1/1‑50 (MQ=255) | ATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGG‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCA > NC_000913/379979‑380071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |